View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15507_low_9 (Length: 246)
Name: NF15507_low_9
Description: NF15507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15507_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 925625 - 925865
Alignment:
| Q |
1 |
tatatctgaatcatggttcaattagattgtatcggacaaccaataaattaatnnnnnnnn----------ttaaatgataaatgcaaagtgtcctctaat |
90 |
Q |
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| T |
925625 |
tatatctggatcatggttcaattagattgaatcggacaaccaataaattaataaaataaaataaaaaaaattaaatgataaatgcaaagtgtcctttaat |
925724 |
T |
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| Q |
91 |
tttgttacatatatttaatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaaga |
190 |
Q |
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| T |
925725 |
tttgttacatatatttaatcatagttgaatatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaaga |
925824 |
T |
|
| Q |
191 |
actccctcgttttgaaaaccaactttctcaagtactctttg |
231 |
Q |
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| T |
925825 |
actccctctttttgaaaaccaactttttcaagtactctttg |
925865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 935203 - 935327
Alignment:
| Q |
107 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaa |
206 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
935203 |
aatcatagttgaagatcagtaaaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatacttcctaagaagcccctctttttgaa |
935302 |
T |
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| Q |
207 |
aaccaactttctcaagtactctttg |
231 |
Q |
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| T |
935303 |
aaccaactttctcaagtactttttg |
935327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 928073 - 928185
Alignment:
| Q |
107 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaa |
206 |
Q |
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||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||| | || | |||||| |||||| |||||| ||||| | |
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| T |
928073 |
aatcatagttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttgga |
928172 |
T |
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| Q |
207 |
aaccaactttctc |
219 |
Q |
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| T |
928173 |
aaccagctttctc |
928185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 938992 - 939104
Alignment:
| Q |
107 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaa |
206 |
Q |
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||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||| | || | |||||| | |||| |||||| ||||| | |
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| T |
938992 |
aatcatagttggagatcagtagaaagaacactgaaaataatcatatctctgctttttcctttcatgaccaaatacttcccaagagttccctccttttgga |
939091 |
T |
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| Q |
207 |
aaccaactttctc |
219 |
Q |
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||||| ||||||| |
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| T |
939092 |
aaccagctttctc |
939104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 923712 - 923837
Alignment:
| Q |
107 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaa |
206 |
Q |
| |
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||||||||||| |||||||| | |||| |||| | |||||||||||||| ||||||||||| | || | ||| || |||||||||||||| ||||| | |
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| T |
923712 |
aatcatagttggggatcagtaaagagaacactggagatgatcatatctctactttttcctttcatgaccaaatatttcctaagaactccctctttttgga |
923811 |
T |
|
| Q |
207 |
aaccaactttctcaagtactctttga |
232 |
Q |
| |
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||||| ||||||| | ||||||||| |
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| T |
923812 |
aaccagctttctccaaaactctttga |
923837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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