View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15508_high_10 (Length: 268)

Name: NF15508_high_10
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15508_high_10
NF15508_high_10
[»] chr5 (7 HSPs)
chr5 (12-180)||(7921199-7921367)
chr5 (199-250)||(7921410-7921461)
chr5 (201-247)||(12201445-12201491)
chr5 (199-236)||(4607067-4607104)
chr5 (199-236)||(9924056-9924093)
chr5 (199-247)||(1969847-1969895)
chr5 (200-236)||(1970448-1970484)
[»] chr8 (2 HSPs)
chr8 (199-236)||(7054169-7054206)
chr8 (199-236)||(42345473-42345510)
[»] chr2 (3 HSPs)
chr2 (206-236)||(10670255-10670285)
chr2 (199-236)||(20991366-20991403)
chr2 (199-247)||(20991951-20991999)
[»] chr4 (7 HSPs)
chr4 (201-234)||(22062160-22062193)
chr4 (199-236)||(23425139-23425176)
chr4 (33-70)||(36827710-36827747)
chr4 (199-236)||(39429304-39429341)
chr4 (199-236)||(39655979-39656016)
chr4 (199-247)||(23424539-23424587)
chr4 (199-247)||(39429869-39429917)
[»] chr3 (2 HSPs)
chr3 (199-236)||(43768104-43768141)
chr3 (199-247)||(43768691-43768739)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 7921199 - 7921367
Alignment:
Q  12 atgaattggaagatgtgagatttgatgatttcttactgtcggccgaagaggttttaaggttgagagagagccgatgggggagaatttgatggaggagcgg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7921199 atgaattggaagatgtgagatttgatgatttcttactgtcggccgaagaggttttaaggttgagagagagccgatgggggagaatttgatggaggagcgg 7921298  T
Q  112 aaagtggcggcagaggaggaagagctacggctgccattgaaaatgcacaagattggaggggaatgaaag 180  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  7921299 aaagtggcggcggaggaggaagagctacggccgccattgaaaatgcactagattggaggggaatgaaag 7921367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 7921410 - 7921461
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaacacacctctttctt 250  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  7921410 ggaaaaaatatgatgtaaacagtccatgataaaattaatacacctctttctt 7921461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 12201491 - 12201445
Alignment:
Q  201 aaaaaatatgatgtaagcagtccatgataaaattaacacacctcttt 247  Q
    |||||||||| ||||||||||| ||||||||||||| || |||||||    
T  12201491 aaaaaatatggtgtaagcagtctatgataaaattaatactcctcttt 12201445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 4607067 - 4607104
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  4607067 ggaaaaaatatggtgtaggcagtccatgataaaattaa 4607104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 9924056 - 9924093
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  9924056 ggaaaaaatatggtgtaggcagtccatgataaaattaa 9924093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 1969895 - 1969847
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaacacacctcttt 247  Q
    |||||||||||| |||| ||| |||||||||||||||| || |||||||    
T  1969895 ggaaaaaatatggtgtaggcaatccatgataaaattaatactcctcttt 1969847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 1970448 - 1970484
Alignment:
Q  200 gaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  1970448 gaaaaaatatggtgtaggcagtccatgataaaattaa 1970484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 7054206 - 7054169
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  7054206 ggaaaaaatatgatgtaggcagtccatgataaaattaa 7054169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 42345510 - 42345473
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  42345510 ggaaaaaatatggtgtaggcagtccatgataaaattaa 42345473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 10670285 - 10670255
Alignment:
Q  206 atatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||||||||||||||||||||||    
T  10670285 atatgatgtaagcagtccatgataaaattaa 10670255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 20991403 - 20991366
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  20991403 ggaaaaaatatggtgtaggcagtccatgataaaattaa 20991366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 20991951 - 20991999
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaacacacctcttt 247  Q
    |||||||||||| |||| ||| |||||||||||||||| || |||||||    
T  20991951 ggaaaaaatatggtgtaggcaatccatgataaaattaatactcctcttt 20991999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 22062160 - 22062193
Alignment:
Q  201 aaaaaatatgatgtaagcagtccatgataaaatt 234  Q
    ||||||||||||||| ||||||||||||||||||    
T  22062160 aaaaaatatgatgtaggcagtccatgataaaatt 22062193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 23425139 - 23425176
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  23425139 ggaaaaaatatggtgtaggcagtccatgataaaattaa 23425176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 36827747 - 36827710
Alignment:
Q  33 ttgatgatttcttactgtcggccgaagaggttttaagg 70  Q
    ||||||||||||||||||| || |||||||||||||||    
T  36827747 ttgatgatttcttactgtcagctgaagaggttttaagg 36827710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 39429341 - 39429304
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  39429341 ggaaaaaatatggtgtaggcagtccatgataaaattaa 39429304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 39655979 - 39656016
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  39655979 ggaaaaaatatggtgtaggcagtccatgataaaattaa 39656016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 23424587 - 23424539
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaacacacctcttt 247  Q
    |||||||||||| |||| ||| |||||||||||||||| || |||||||    
T  23424587 ggaaaaaatatggtgtaggcaatccatgataaaattaatactcctcttt 23424539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 39429869 - 39429917
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaacacacctcttt 247  Q
    |||||||||||| |||| ||| |||||||||||||||| || |||||||    
T  39429869 ggaaaaaatatggtgtaggcaatccatgataaaattaatactcctcttt 39429917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 43768141 - 43768104
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaa 236  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  43768141 ggaaaaaatatggtgtaggcagtccatgataaaattaa 43768104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 43768691 - 43768739
Alignment:
Q  199 ggaaaaaatatgatgtaagcagtccatgataaaattaacacacctcttt 247  Q
    |||||||||||| |||| ||| |||||||||||||||| || |||||||    
T  43768691 ggaaaaaatatggtgtaggcaatccatgataaaattaatactcctcttt 43768739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University