View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15508_high_11 (Length: 242)
Name: NF15508_high_11
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15508_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 24185122 - 24185029
Alignment:
| Q |
134 |
taaagaaactaaagaaatttgcagcagactgtcaccatcattattaatgttcatgattcacaaatcttgtggaccactgtactagaatattact |
227 |
Q |
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| T |
24185122 |
taaagaaactaaagaaatttgcagcagactgtcaccatcattattaatgttcatgattcacaaatcttgtggaccactgtactagaatattact |
24185029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 24185291 - 24185165
Alignment:
| Q |
15 |
gagtcgattatattgtattatgaatttataatattagttaaactcaatagtta---------gatgcctctgtaaaattattacattcttgtaatggttt |
105 |
Q |
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| T |
24185291 |
gagtcgattatattgtattatgaatttataatattggttagactcaaaagttaattaatttagatacttctgtaaaattattacattcttgtaatggttt |
24185192 |
T |
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| Q |
106 |
aacaactttcttaaaataccattcaat |
132 |
Q |
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| T |
24185191 |
aacaactttcttaaaataccatacaat |
24185165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 24177988 - 24177928
Alignment:
| Q |
168 |
ccatcattattaatgttcatgattcacaaatcttgtggaccactgtactagaatattactg |
228 |
Q |
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| T |
24177988 |
ccatcattattaatgttcatgattcacaaatcttgtggaccactgtactagaatattactg |
24177928 |
T |
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