View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15508_high_13 (Length: 204)

Name: NF15508_high_13
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15508_high_13
NF15508_high_13
[»] chr7 (5 HSPs)
chr7 (1-204)||(29818345-29818548)
chr7 (1-204)||(29573595-29573798)
chr7 (1-204)||(29596240-29596443)
chr7 (1-204)||(29826597-29826800)
chr7 (55-144)||(29754316-29754405)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 29818345 - 29818548
Alignment:
Q  1 ttaatccatctggcaatctacaaagtcttgaacatccagaaatgttcaaaattatgagggaattcaatccatgaatggtatccggaaggcaaacaagact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29818345 ttaatccatctggcaatctacaaagtcttgaacatccagaaatgttcaaaattatgagggaattcaatccatgaatggtatccggaaggcaaacaagact 29818444  T
Q  101 tttgcagtcctttaagttcaaattagtaagtccaactaggcttccaagtgataagggcagttttcttatatctgttccttttaaagcaaggattgataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29818445 tttgcagtcctttaagttcaaattagtaagtccaactaggcttccaagtgataagggcagttttcttatatctgttccttttaaagcaaggattgataaa 29818544  T
Q  201 tttt 204  Q
    ||||    
T  29818545 tttt 29818548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 29573798 - 29573595
Alignment:
Q  1 ttaatccatctggcaatctacaaagtcttgaacatccagaaatgttcaaaattatgagggaattcaatccatgaatggtatccggaaggcaaacaagact 100  Q
    |||| |||||||||| |||||||||| |||| ||||| ||||||| || | ||||||||||||||||||||||||||||||| ||||| ||||| || ||    
T  29573798 ttaaaccatctggcagtctacaaagttttgagcatcctgaaatgtccagagttatgagggaattcaatccatgaatggtatctggaagacaaaccaggct 29573699  T
Q  101 tttgcagtcctttaagttcaaattagtaagtccaactaggcttccaagtgataagggcagttttcttatatctgttccttttaaagcaaggattgataaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  29573698 tttgcagtcctttaagttcaaattagtaagtccgactagtcttccaagtgataagggcagttttcttatatctgttccttctaaagcaagcattgataaa 29573599  T
Q  201 tttt 204  Q
    ||||    
T  29573598 tttt 29573595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 29596240 - 29596443
Alignment:
Q  1 ttaatccatctggcaatctacaaagtcttgaacatccagaaatgttcaaaattatgagggaattcaatccatgaatggtatccggaaggcaaacaagact 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||    
T  29596240 ttaatccatctggcaatctacaaagtcttgaacatccggaaatgttcaaaattatgagagaattcaatcgatgaatggtatctggaaggcaaacaagact 29596339  T
Q  101 tttgcagtcctttaagttcaaattagtaagtccaactaggcttccaagtgataagggcagttttcttatatctgttccttttaaagcaaggattgataaa 200  Q
    |||||||| ||||||||| ||| ||| |||||||||||||||||| |||||| |||| || ||||| ||| || |||||| ||| ||||| || |||| |    
T  29596340 tttgcagttctttaagtttaaactagcaagtccaactaggcttcctagtgatgagggtaggtttctaatagctattccttctaaggcaagcatcgataga 29596439  T
Q  201 tttt 204  Q
    ||||    
T  29596440 tttt 29596443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 29826597 - 29826800
Alignment:
Q  1 ttaatccatctggcaatctacaaagtcttgaacatccagaaatgttcaaaattatgagggaattcaatccatgaatggtatccggaaggcaaacaagact 100  Q
    |||| ||||||||||||||||| ||| |||| || |||||||| | ||||| | |||||||||||||||||||||||||||| ||||| |||||||||||    
T  29826597 ttaaaccatctggcaatctacacagttttgagcacccagaaatatccaaaactctgagggaattcaatccatgaatggtatctggaagacaaacaagact 29826696  T
Q  101 tttgcagtcctttaagttcaaattagtaagtccaactaggcttccaagtgataagggcagttttcttatatctgttccttttaaagcaaggattgataaa 200  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||||||| |||  || || |||| | ||||||||| ||||||||||||||||| |    
T  29826697 tttgcagtccttcaagttcaaatcagtaagtccaactaggcgtccaagtgatgaggttagattccttaaagctgttccttgtaaagcaaggattgataga 29826796  T
Q  201 tttt 204  Q
    ||||    
T  29826797 tttt 29826800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 29754405 - 29754316
Alignment:
Q  55 tgagggaattcaatccatgaatggtatccggaaggcaaacaagacttttgcagtcctttaagttcaaattagtaagtccaactaggcttc 144  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||    
T  29754405 tgagggaattcaatccatgaatggtatctggaaggcaaacaagactttttcagttctttaagtttaaattagtgagtccaactaggcttc 29754316  T

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