View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15508_high_5 (Length: 312)
Name: NF15508_high_5
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15508_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 35822951 - 35823238
Alignment:
| Q |
20 |
aaattctgctagatttgtctgcacaagattccaaatggttttcatgagggtttgccaatttccaagatacttgggaactttcaaatactttggcctttta |
119 |
Q |
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| T |
35822951 |
aaattctgctagatttgtctgcacaagattccaaatggttttcatgagggtttgccaatttccaagatacttgggaactttcaaatactttggcctttta |
35823050 |
T |
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| Q |
120 |
cccttctttttatttccaatttgtgcaaaaatgtttttcaaaatgacaaatgtgtaagagatcagaacagcaacatcctcccaagttatatctatcaaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35823051 |
cccttctttttatttccaatttgtgcaaaaatgtttttcaaaatgacaaatgtgtaagagatcagaacagcaacatcctcccaagttatatctatcaaca |
35823150 |
T |
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| Q |
220 |
aaagatatatctcacccttaaacctttttccagttggagacgccatttaagttcctccacttgtttttcaagcttaccctttgcttct |
307 |
Q |
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| T |
35823151 |
aaagatatatctcacccttaaacctttttccagttggagacgccatttaagttcctccacttgtttttcaagcttaccctttgcttct |
35823238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 35823717 - 35823795
Alignment:
| Q |
228 |
atctcacccttaaacctttttccagttggagacgccatttaagttcctccacttgtttttcaagcttaccctttgcttc |
306 |
Q |
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| T |
35823717 |
atctcacctttaaacctttttccagttggagatgccaagtaagttccttcacttttttttcaagcatactctttgcttc |
35823795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 47699111 - 47699029
Alignment:
| Q |
225 |
tatatctcacccttaaacctttttccagttggagacgccatttaagttcctccacttgtttttcaagcttaccctttgcttct |
307 |
Q |
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|||||||||||||||||| |||||| |||||||| |||||| | |||||||||||| |||||||||||||| ||||||||||| |
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| T |
47699111 |
tatatctcacccttaaacttttttctagttggaggcgccatgtgagttcctccactcgtttttcaagcttatcctttgcttct |
47699029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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