View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15508_high_6 (Length: 273)

Name: NF15508_high_6
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15508_high_6
NF15508_high_6
[»] chr5 (14 HSPs)
chr5 (33-263)||(24394532-24394762)
chr5 (121-214)||(22652390-22652483)
chr5 (115-264)||(19006565-19006714)
chr5 (106-150)||(23224882-23224926)
chr5 (122-206)||(16842507-16842593)
chr5 (122-155)||(11204711-11204744)
chr5 (122-155)||(20498290-20498323)
chr5 (108-157)||(27598636-27598685)
chr5 (123-155)||(7898051-7898083)
chr5 (123-155)||(17920920-17920952)
chr5 (121-165)||(19663576-19663620)
chr5 (123-155)||(20845931-20845963)
chr5 (123-155)||(22130970-22131002)
chr5 (123-155)||(26183371-26183403)
[»] chr6 (12 HSPs)
chr6 (32-214)||(10374837-10375019)
chr6 (115-214)||(22885214-22885313)
chr6 (115-214)||(22903172-22903271)
chr6 (115-214)||(22918017-22918116)
chr6 (87-235)||(1118480-1118627)
chr6 (121-249)||(10289056-10289186)
chr6 (115-210)||(1103392-1103486)
chr6 (162-214)||(2401289-2401341)
chr6 (114-150)||(14448624-14448660)
chr6 (115-210)||(3357078-3357173)
chr6 (115-259)||(3904699-3904842)
chr6 (123-155)||(19215944-19215976)
[»] chr8 (5 HSPs)
chr8 (32-254)||(38802291-38802514)
chr8 (116-157)||(24482301-24482342)
chr8 (162-214)||(14423729-14423781)
chr8 (123-155)||(17279879-17279911)
chr8 (123-155)||(17880876-17880908)
[»] chr2 (10 HSPs)
chr2 (106-254)||(15324989-15325138)
chr2 (106-259)||(31067517-31067671)
chr2 (57-243)||(17841193-17841378)
chr2 (33-212)||(18593477-18593653)
chr2 (33-259)||(21713384-21713609)
chr2 (120-260)||(8944721-8944859)
chr2 (117-236)||(17395540-17395659)
chr2 (95-176)||(40588738-40588819)
chr2 (103-142)||(12952442-12952481)
chr2 (123-155)||(18765666-18765698)
[»] scaffold0054 (1 HSPs)
scaffold0054 (115-214)||(8731-8830)
[»] chr4 (12 HSPs)
chr4 (115-259)||(11865149-11865291)
chr4 (115-256)||(24608688-24608825)
chr4 (121-259)||(39668454-39668590)
chr4 (106-210)||(15841606-15841709)
chr4 (119-154)||(19564821-19564856)
chr4 (123-155)||(8163772-8163804)
chr4 (123-155)||(11905085-11905117)
chr4 (115-191)||(17871604-17871680)
chr4 (123-155)||(21478098-21478130)
chr4 (123-155)||(22554960-22554992)
chr4 (123-155)||(23541234-23541266)
chr4 (123-155)||(25354772-25354804)
[»] chr3 (10 HSPs)
chr3 (115-210)||(10189280-10189375)
chr3 (115-210)||(10082355-10082450)
chr3 (121-202)||(8531380-8531461)
chr3 (33-212)||(43902114-43902294)
chr3 (121-214)||(19583987-19584080)
chr3 (115-176)||(27716327-27716388)
chr3 (115-210)||(15962255-15962349)
chr3 (106-200)||(8147632-8147726)
chr3 (67-148)||(12032402-12032482)
chr3 (123-155)||(9031517-9031549)
[»] chr7 (16 HSPs)
chr7 (22-259)||(11918363-11918597)
chr7 (117-209)||(2392860-2392952)
chr7 (115-210)||(12505689-12505785)
chr7 (115-210)||(12484259-12484355)
chr7 (115-157)||(9739752-9739794)
chr7 (119-259)||(21383556-21383694)
chr7 (122-155)||(2076495-2076528)
chr7 (122-155)||(2082914-2082947)
chr7 (124-157)||(30226076-30226109)
chr7 (123-155)||(7620071-7620103)
chr7 (123-155)||(9564247-9564279)
chr7 (123-155)||(11628630-11628662)
chr7 (123-155)||(14975423-14975455)
chr7 (123-155)||(14984662-14984694)
chr7 (123-155)||(15404899-15404931)
chr7 (123-155)||(15414273-15414305)
[»] chr1 (7 HSPs)
chr1 (100-193)||(49086690-49086783)
chr1 (106-210)||(4650294-4650397)
chr1 (115-202)||(21433930-21434017)
chr1 (115-202)||(25123322-25123409)
chr1 (123-185)||(33062376-33062437)
chr1 (123-155)||(17038238-17038270)
chr1 (123-155)||(52436956-52436988)
[»] scaffold0328 (1 HSPs)
scaffold0328 (123-155)||(17109-17141)
[»] scaffold0064 (1 HSPs)
scaffold0064 (123-155)||(53061-53093)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 24394532 - 24394762
Alignment:
Q  33 aatgtcgaatgtaatgacaagatatcgtgacatcacaaataacaatttacaaacttaaattaaattgcagaatgtaaatgatacaagttatttgttaacc 132  Q
    ||||||||||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  24394532 aatgtcgaatgtaatgataaaatatcgtgacatcacaaataacagcttacaaacttaaattaaattgcagaaagtaaatgatacgagttatttgttaacc 24394631  T
Q  133 cagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgcgtaacaacctccggtt 232  Q
    || ||||||||||||||| |||||| || |||||||||||| || ||||||||  ||||||||| |||| ||||||||||||||||||||||||||||||    
T  24394632 catttcggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatccactataatagtatttgtttgaagtcctgcgtaacaacctccggtt 24394731  T
Q  233 tacttgccttcacacctaatcattacctatg 263  Q
    ||||||||||| |||||||||||||||||||    
T  24394732 tacttgccttcgcacctaatcattacctatg 24394762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 22652483 - 22652390
Alignment:
Q  121 tatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    ||||||||| |||||| | ||||||||||  ||||||||| ||||||| |||| || ||||||||| ||||||||| |||||||||||||||||    
T  22652483 tatttgttagcccagtccagtgcaacgtcgcctacatatgggggcatcgaagccaggaaggaaattcactataatattattagtttgaagtcct 22652390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 264
Target Start/End: Complemental strand, 19006714 - 19006565
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaag--tc 212  Q
    ||||| |||||||||||||| |||||||||| |||| | |||| || |||| ||||||  || | ||||||  ||||||||| |||||||||||||  |     
T  19006714 acaaggtatttgttaacccatttcggtgcaatgtcaccgacatctgggggc-tccaagtaaggacggaaatccactataatagtattagtttgaagcatg 19006616  T
Q  213 ctgcgtaacaacctccggtttacttgccttcacacctaatcattacctatgc 264  Q
    | |   ||||||||| |||||||| | ||||||||||||||| |||| ||||    
T  19006615 cagaaaaacaacctctggtttactag-cttcacacctaatcactacccatgc 19006565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 23224882 - 23224926
Alignment:
Q  106 gtaaatgatacaagttatttgttaacccagttcggtgcaacgtca 150  Q
    |||||||| |||||||||||||||||||||||| |||||| ||||    
T  23224882 gtaaatgacacaagttatttgttaacccagttcagtgcaatgtca 23224926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 16842507 - 16842593
Alignment:
Q  122 atttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaag-ctagaaaggaaatttactat-aataatattagttt 206  Q
    ||||| ||| ||||||||||||||||||| |||||| ||  |||||||| | | |||||||||||| ||| | ||||||||||||||    
T  16842507 atttggtaatccagttcggtgcaacgtcacctacatctggaggcatccatgccaagaaaggaaattcactctcaataatattagttt 16842593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 11204711 - 11204744
Alignment:
Q  122 atttgttaacccagttcggtgcaacgtcatctac 155  Q
    ||||||||||||||||||||||||||||| ||||    
T  11204711 atttgttaacccagttcggtgcaacgtcacctac 11204744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 20498323 - 20498290
Alignment:
Q  122 atttgttaacccagttcggtgcaacgtcatctac 155  Q
    ||||||||||||||||||||||||||||| ||||    
T  20498323 atttgttaacccagttcggtgcaacgtcacctac 20498290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 27598636 - 27598685
Alignment:
Q  108 aaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacat 157  Q
    |||||| ||| ||||||||||||||||| |||||||||| ||| ||||||    
T  27598636 aaatgacacacgttatttgttaacccagatcggtgcaacatcacctacat 27598685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 7898083 - 7898051
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  7898083 tttgttaacccagttcggtgcaacgtcacctac 7898051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 17920952 - 17920920
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  17920952 tttgttaacccagttcggtgcaacgtcacctac 17920920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 19663576 - 19663620
Alignment:
Q  121 tatttgttaacccagttcggtgcaacgtcatctacatatgagggc 165  Q
    |||||||| ||||||||||||||||| ||| ||||||||| ||||    
T  19663576 tatttgttgacccagttcggtgcaacctcacctacatatgcgggc 19663620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 20845963 - 20845931
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  20845963 tttgttaacccagttcggtgcaacgtcacctac 20845931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 22131002 - 22130970
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  22131002 tttgttaacccagttcggtgcaacgtcacctac 22130970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 26183403 - 26183371
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  26183403 tttgttaacccagttcggtgcaacgtcacctac 26183371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 10375019 - 10374837
Alignment:
Q  32 gaatgtcgaatgtaatgacaagatatcgtgacatcacaaataacaatttacaaacttaaattaaattgcagaatgtaaatgatacaagttatttgttaac 131  Q
    |||||||||||||||||  |||||||||| ||| |||||||||||||| |||| |||||| |||||||||||| |||||||| ||||| |||| ||||||    
T  10375019 gaatgtcgaatgtaatgttaagatatcgtaacaacacaaataacaattaacaa-cttaaagtaaattgcagaaagtaaatgacacaaggtattagttaac 10374921  T
Q  132 ccagttcggtgcaacgtcatctacatatgagggc-atccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    ||||||  ||||||||||| |||||| || |||| || ||||| || |||||||   ||||||||| |||||||||||||||||    
T  10374920 ccagtttagtgcaacgtcacctacatttgggggcaattcaagccaggaaggaaaaccactataatagtattagtttgaagtcct 10374837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 22885313 - 22885214
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    ||||| |||||||||||||||| ||||||||||||| |||||| || |||||||||||| || |||||||| |||||||||| |||||||||||||||||    
T  22885313 acaagatatttgttaacccagtacggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatctactataatagtattagtttgaagtcct 22885214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 22903271 - 22903172
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    ||||| |||||||||||||||| ||||||||||||| |||||| || || ||||||||| || ||| |||| |||||||||| |||||||||||||||||    
T  22903271 acaagatatttgttaacccagtgcggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcct 22903172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 22918116 - 22918017
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    ||||| ||||||||||||||||  |||||||||||| |||||| ||||| ||||||||| || |||||||| ||  |||||| |||||||||||||||||    
T  22918116 acaagatatttgttaacccagtatggtgcaacgtcacctacatctgaggacatccaagccaggaaggaaatctataataatagtattagtttgaagtcct 22918017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 1118480 - 1118627
Alignment:
Q  87 ttaaattaaattgcagaatgtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatt 186  Q
    ||||| ||||||||||||  ||||||  |||||||||||| |||   |||| |||||||||||| |||||| || |||||| |||||||  ||||||||     
T  1118480 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaatt-agttaggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 1118578  T
Q  187 tactataataatattagtttgaagtcctgcgt-aacaacctccggtttac 235  Q
     ||||||| ||||||||||||||||||| | | ||| |||||||||||||    
T  1118579 gactataa-aatattagtttgaagtcctacataaactacctccggtttac 1118627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 10289056 - 10289186
Alignment:
Q  121 tatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataata--atattagtttgaagtcctgcgt 218  Q
    ||||||||||||||||||||||||| ||||  || || || ||||||| | | ||| ||||||||  |||||||||  ||||||||||||||||||  ||    
T  10289056 tatttgttaacccagttcggtgcaatgtcacttatatctgggggcatctacgttaggaaggaaatccactataatagtatattagtttgaagtcctatgt 10289155  T
Q  219 -aacaacctccggtttacttgccttcacacct 249  Q
     |||||||||||||| || ||||||| |||||    
T  10289156 gaacaacctccggttcac-tgccttctcacct 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 1103486 - 1103392
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaag 210  Q
    ||||||||||| ||||||||||||||||||||| ||  ||| | || ||||  |||||| || || ||||| |||||||||| |||||||||||||    
T  1103486 acaagttattttttaacccagttcggtgcaacgccacttacgtctg-gggctaccaagccaggaaagaaatctactataatagtattagtttgaag 1103392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 2401289 - 2401341
Alignment:
Q  162 gggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    |||||||||||| || ||||||||| ||||||||| |||||||||||| ||||    
T  2401289 gggcatccaagccaggaaggaaattcactataatagtattagtttgaaatcct 2401341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 14448660 - 14448624
Alignment:
Q  114 tacaagttatttgttaacccagttcggtgcaacgtca 150  Q
    ||||||||||||||||||| |||||||||||||||||    
T  14448660 tacaagttatttgttaacctagttcggtgcaacgtca 14448624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 3357173 - 3357078
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaag 210  Q
    ||||| |||||||||||||| || ||||||| |||| ||| || |  ||||  |||||| |  ||||||||| ||||||||| |||||||||||||    
T  3357173 acaaggtatttgttaacccaattaggtgcaatgtcacctatatctaggggctaccaagccaagaaggaaattcactataatagtattagtttgaag 3357078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 259
Target Start/End: Complemental strand, 3904842 - 3904699
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    ||||| |||||||||||| ||||||||| ||||||  |||| | || ||||  |||||| || ||||||||  ||||||||| ||||| ||  |||||||    
T  3904842 acaagatatttgttaacctagttcggtgaaacgtcccctacgtttg-gggctaccaagccaggaaggaaatcaactataatagtattaattgaaagtcct 3904744  T
Q  215 gcgt-aacaacctccggtttacttgccttcacacctaatcattacc 259  Q
      || |||||||||||||||| | |||||| ||| |||||| ||||    
T  3904743 atgtgaacaacctccggttta-tcgccttctcacttaatcactacc 3904699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 19215944 - 19215976
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  19215944 tttgttaacccagttcggtgcaacgtcacctac 19215976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 38802514 - 38802291
Alignment:
Q  32 gaatgtcgaatgtaatgacaagatatcgtgacatcacaaataacaatttacaaacttaaattaaattgcagaatgtaaatgatacaagttatttgttaac 131  Q
    ||||||||||||||||| ||||| ||| ||||| |||||||||||||| |||||||| || ||||||| ||||  || ||| |||||||||||||| ||     
T  38802514 gaatgtcgaatgtaatgtcaagacatcttgacaacacaaataacaattaacaaacttgaagtaaattgtagaaaatagatggtacaagttatttgtaaat 38802415  T
Q  132 ccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgcgt-aacaacctccgg 230  Q
    |||||| ||| |||| ||| |||||| || |||||||||||   | ||||||||  ||||||||| ||||||||||||||| |  || |||| ||||| |    
T  38802414 ccagtttggtacaacatcacctacatctgggggcatccaagtctggaaggaaatccactataatagtattagtttgaagtcttatgtaaacagcctccag 38802315  T
Q  231 tttacttgccttcacacctaatca 254  Q
    ||||| || |||| ||||||||||    
T  38802314 tttacctgtcttcgcacctaatca 38802291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 24482301 - 24482342
Alignment:
Q  116 caagttatttgttaacccagttcggtgcaacgtcatctacat 157  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  24482301 caagttttttgttaacccagtttggtgcaacgtcacctacat 24482342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 14423729 - 14423781
Alignment:
Q  162 gggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    |||||||||||| || ||||||||  ||||||||| |||||||| ||||||||    
T  14423729 gggcatccaagccaggaaggaaatccactataatagtattagttcgaagtcct 14423781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 17279879 - 17279911
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  17279879 tttgttaacccagttcggtgcaacgtcacctac 17279911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 17880908 - 17880876
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  17880908 tttgttaacccagttcggtgcaacgtcacctac 17880876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 254
Target Start/End: Original strand, 15324989 - 15325138
Alignment:
Q  106 gtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtt 205  Q
    |||||||  |||||||||||||||||||||||||||||||| ||| | |||| | | ||||||||||| || ||| |||| |||||||||| ||||||||    
T  15324989 gtaaatggcacaagttatttgttaacccagttcggtgcaacttcaccaacatcttaaggcatccaagccaggaagaaaatctactataatagtattagtt 15325088  T
Q  206 tgaagtcctgcgt-aacaacctccggtttacttgccttcacacctaatca 254  Q
    | ||||||| ||| |||||||| |||||||||||||||| ||| ||||||    
T  15325089 taaagtcctacgtaaacaaccttcggtttacttgccttcgcacttaatca 15325138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 259
Target Start/End: Complemental strand, 31067671 - 31067517
Alignment:
Q  106 gtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtt 205  Q
    |||||||| |||||||||||||||||| |||| |||||||||||| |||| | || ||||  ||||   || ||||||||  ||||||||| ||||||||    
T  31067671 gtaaatgacacaagttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactataatagtattagtt 31067572  T
Q  206 tgaagtcctgc-gtaacaacctccggtttacttgccttcacacctaatcattacc 259  Q
    ||||||||| | | ||||||||| ||||| |||||||||||||||||||| ||||    
T  31067571 tgaagtcctacggaaacaacctctggtttgcttgccttcacacctaatcactacc 31067517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 17841378 - 17841193
Alignment:
Q  57 tcgtgacatcacaaataacaatttacaaacttaaattaaattgcagaatgtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctaca 156  Q
    |||||||| || |||||| |||| ||||||||||| |||||| ||| | |||||||| ||||||||||   ||| | ||||||  |||||||||  ||||    
T  17841378 tcgtgacaacataaataataattaacaaacttaaaataaattacagtaagtaaatgacacaagttatt--ctaatcaagttcgtggcaacgtcacataca 17841281  T
Q  157 tatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgcgt-aacaacctccggtttacttgccttc 243  Q
    |||| ||||||| ||||  | |||||| |  ||||||||| ||||||||||||||| | ||| ||||||||||||||||||| |||||    
T  17841280 tatgggggcatcaaagcctggaaggaagtccactataatagtattagtttgaagtcatacgtaaacaacctccggtttactttccttc 17841193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 212
Target Start/End: Original strand, 18593477 - 18593653
Alignment:
Q  33 aatgtcgaatgtaatgacaagatatcgtgacatcacaaataacaatttacaaacttaaattaaattgcagaatgtaaatgatacaagttatttgttaacc 132  Q
    ||||||||||| |||| ||||| ||||| | | |||||||||||||  ||||| |||| | |||||| || | |||||| | ||||  ||||||||||||    
T  18593477 aatgtcgaatgcaatgtcaagacatcgtaataacacaaataacaataaacaaatttaagt-aaattgtaggaagtaaataacacaaagtatttgttaacc 18593575  T
Q  133 cagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtc 212  Q
    ||||||||||||| |||| |||||| || |||||||||||| |  |||| |||  |||||||||||||||||||||||||    
T  18593576 cagttcggtgcaatgtcacctacatctg-gggcatccaagccaagaagg-aatccactataataatattagtttgaagtc 18593653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 259
Target Start/End: Complemental strand, 21713609 - 21713384
Alignment:
Q  33 aatgtcgaatgtaatgacaagatatcgtgacatcacaaataacaatttacaaacttaaattaaattgcagaatgtaaatgatacaagttatttgttaacc 132  Q
    ||||||||||  |||| ||||| ||| | | | |||||||||||||  |||| |||||| |||||||||  | |||||| | |||   || | |||||||    
T  21713609 aatgtcgaatacaatgtcaagacatcataataacacaaataacaataaacaa-cttaaagtaaattgcaagaagtaaataacacagagtaatcgttaacc 21713511  T
Q  133 cagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgcgt-aacaacctccggt 231  Q
    ||||| |||||||| ||| |||||| |  |||||||||| | || ||||||||  ||||||||| ||||||||||||||| || || ||||||||| |||    
T  21713510 cagtttggtgcaacatcacctacatgtaggggcatccaaaccaggaaggaaatccactataatagtattagtttgaagtcatgtgtaaacaacctctggt 21713411  T
Q  232 ttacttgccttcacacctaatcattacc 259  Q
    |||| ||||||| |||||||||| ||||    
T  21713410 ttac-tgccttcgcacctaatcactacc 21713384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 8944721 - 8944859
Alignment:
Q  120 ttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgcgt- 218  Q
    ||||||||||||||||| ||||||||| ||| |||||| || |||   ||||  ||| |||||||| |||||||||| ||||||||||||| ||||| |     
T  8944721 ttatttgttaacccagt-cggtgcaacatcacctacatttgggggttaccaaattaggaaggaaatctactataatagtattagtttgaag-cctgcata 8944818  T
Q  219 aacaacctccggtttacttgccttcacacctaatcattacct 260  Q
    ||||||||| |||||||| | |||| |||||||||| |||||    
T  8944819 aacaacctctggtttactag-cttcgcacctaatcactacct 8944859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 17395540 - 17395659
Alignment:
Q  117 aagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgc 216  Q
    |||||||||||| ||||||||||||||||||||  |||  | || ||||   ||||| || ||||||||  ||||||||| ||||||||||||| |||||    
T  17395540 aagttatttgtttacccagttcggtgcaacgtcgcctaagtgtgggggctatcaagccaggaaggaaatccactataatagtattagtttgaag-cctgc 17395638  T
Q  217 gt-aacaacctccggtttact 236  Q
     | |||||| |||||||||||    
T  17395639 ataaacaacatccggtttact 17395659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 40588819 - 40588738
Alignment:
Q  95 aattgcagaatgtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctag 176  Q
    |||||||| | |||||| | ||| | |||||||||| |||||||| |||||||||| |||||| || ||| |||||||||||    
T  40588819 aattgcaggaagtaaataacacagggtatttgttaatccagttcgatgcaacgtcacctacatctgggggtatccaagctag 40588738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 12952442 - 12952481
Alignment:
Q  103 aatgtaaatgatacaagttatttgttaacccagttcggtg 142  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  12952442 aatgtaaatggcacaagttatttgttaacccagttcggtg 12952481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 18765666 - 18765698
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  18765666 tttgttaacccagttcggtgcaacgtcacctac 18765698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 8830 - 8731
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    ||||| |||||||||||||||| ||||||||||||| |||||| || || ||||||||| || ||| |||| |||||||||| |||||||||||||||||    
T  8830 acaagatatttgttaacccagtacggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcct 8731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 259
Target Start/End: Complemental strand, 11865291 - 11865149
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    ||||||||||||||||||||||||||||||||||| ||||| | || ||||  |||||| || ||| ||||| ||||||||| | ||||||||||| | |    
T  11865291 acaagttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaagccaggaagaaaattcactataatagtgttagtttgaag-cat 11865193  T
Q  215 gcgtaacaacctccggtttacttgccttcacacctaatcattacc 259  Q
    |||||| |||||||| | |||| | |||| |||||||||| ||||    
T  11865192 gcgtaaaaacctccgttctactag-cttcgcacctaatcactacc 11865149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 24608688 - 24608825
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    |||||||||||||||||||||||||||||||||||| |||| | || || |  ||||||| ||||||||||| |||||||||  |||||||||||| | |    
T  24608688 acaagttatttgttaacccagttcggtgcaacgtcacctacgtctggggactaccaagcttgaaaggaaattcactataata--attagtttgaag-cat 24608784  T
Q  215 gcgtaacaacctccggtttacttgccttcacacctaatcatt 256  Q
       ||| |||||||||| |||| | |||||||||||||||||    
T  24608785 atataaaaacctccggtctactag-cttcacacctaatcatt 24608825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 39668590 - 39668454
Alignment:
Q  121 tatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgcgt-a 219  Q
    |||||||| ||| |||||||||||||||||| ||||| || |||| ||||| |||| ||||||||| | ||||||| ||||| ||||||| ||||| | |    
T  39668590 tatttgttgaccaagttcggtgcaacgtcatttacatctgggggc-tccaacctaggaaggaaattcattataatagtattactttgaag-cctgcataa 39668493  T
Q  220 acaacctccggtttacttgccttcacacctaatcattacc 259  Q
    ||||||||| ||||||| | |||| |||||||||| ||||    
T  39668492 acaacctcctgtttactag-cttcgcacctaatcactacc 39668454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 15841606 - 15841709
Alignment:
Q  106 gtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtt 205  Q
    ||||| || |||||| ||||||||||||||||| |||||| |||| |||| | || || ||   |||  || ||||||||| ||||||||||||||||||    
T  15841606 gtaaaagacacaagtaatttgttaacccagttcagtgcaatgtcacctacgtctg-ggtcaaataagtcaggaaggaaattcactataataatattagtt 15841704  T
Q  206 tgaag 210  Q
    |||||    
T  15841705 tgaag 15841709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 154
Target Start/End: Original strand, 19564821 - 19564856
Alignment:
Q  119 gttatttgttaacccagttcggtgcaacgtcatcta 154  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19564821 gttatttgttaacccagtttggtgcaacgtcatcta 19564856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 8163772 - 8163804
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  8163772 tttgttaacccagttcggtgcaacgtcacctac 8163804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 11905085 - 11905117
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  11905085 tttgttaacccagttcggtgcaacgtcacctac 11905117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 17871680 - 17871604
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttacta 191  Q
    ||||| ||||| || ||||||||||||||||| ||| |||||| |||||||  |||||  || ||||||||| ||||    
T  17871680 acaagatatttcttgacccagttcggtgcaacttcacctacatctgagggctaccaagtcaggaaggaaattcacta 17871604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 21478098 - 21478130
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  21478098 tttgttaacccagttcggtgcaacgtcacctac 21478130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 22554960 - 22554992
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  22554960 tttgttaacccagttcggtgcaacgtcacctac 22554992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 23541234 - 23541266
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  23541234 tttgttaacccagttcggtgcaacgtcacctac 23541266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 25354804 - 25354772
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  25354804 tttgttaacccagttcggtgcaacgtcacctac 25354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 10189375 - 10189280
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaag 210  Q
    ||||||| |||||||||||||||||||||||||||| |||||| |  ||||  ||||||||| ||||||||| ||||| ||||||||| |||||||    
T  10189375 acaagttgtttgttaacccagttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaattcactatgataatattaatttgaag 10189280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 10082450 - 10082355
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaag 210  Q
    ||||||| |||||||||||||||||||||||||||| |||||| |  ||||  ||||||||| ||||||||| ||| | ||||||||| |||||||    
T  10082450 acaagttgtttgttaacccagttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaattcactgtgataatattaatttgaag 10082355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 8531380 - 8531461
Alignment:
Q  121 tatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatatta 202  Q
    |||||||||||||||||||||||||||||| |||| | ||  ||||||||||| |||||||||||  ||||||||| |||||    
T  8531380 tatttgttaacccagttcggtgcaacgtcacctacctctggtggcatccaagccagaaaggaaatccactataatagtatta 8531461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 43902294 - 43902114
Alignment:
Q  33 aatgtcgaatgtaatgacaagatatcgtgacatcacaaataacaat--ttacaaacttaaattaaattgcagaatgtaaatgatacaagttatttgttaa 130  Q
    |||||||||||||||  ||||| ||||| | | |||||||||||||  | |  || ||||  |||| ||||| | | |||| | ||||| ||||||||||    
T  43902294 aatgtcgaatgtaatatcaagacatcgtaataacacaaataacaataataaataatttaatgtaaagtgcaggaaggaaataacacaaggtatttgttaa 43902195  T
Q  131 cccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtc 212  Q
     ||| ||||||||||||||| |||||| || |||| ||||||| || || ||||| |||||||| | |||||||||||||||    
T  43902194 tccaattcggtgcaacgtcacctacatttgggggc-tccaagccaggaaagaaatctactataacagtattagtttgaagtc 43902114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 19584080 - 19583987
Alignment:
Q  121 tatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcct 214  Q
    |||||||||||||||||| |||||| |||| |||||| |  ||| |||||||| || ||| ||||  ||||||||| |||||||| ||||||||    
T  19584080 tatttgttaacccagttcagtgcaatgtcacctacatctaggggaatccaagccaggaagaaaatccactataatagtattagttcgaagtcct 19583987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 27716327 - 27716388
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctag 176  Q
    ||||| |||||| ||||| ||||| ||||||||||| ||||||||| |||||||||||||||    
T  27716327 acaagatatttggtaacctagttcagtgcaacgtcacctacatatgcgggcatccaagctag 27716388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 15962255 - 15962349
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaag 210  Q
    ||||||| |||||||||||| |||||||||| |||| |||||| | | |||  ||||||||| ||||||||| |||||| || ||| | |||||||    
T  15962255 acaagttgtttgttaacccacttcggtgcaatgtcacctacatct-aaggctaccaagctaggaaggaaattcactatagtagtatcaatttgaag 15962349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 8147726 - 8147632
Alignment:
Q  106 gtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatat 200  Q
    ||||| || |||||| ||||||||||||| ||||||||||| ||| ||  || |  ||||  |||||| || ||||||||| |||||||||||||    
T  8147726 gtaaaagaaacaagtaatttgttaacccaattcggtgcaacttcacctttatctaggggctaccaagccaggaaggaaattcactataataatat 8147632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 12032482 - 12032402
Alignment:
Q  67 acaaataacaatttacaaacttaaattaaattgcagaatgtaaatgatacaagttatttgttaacccagttcggtgcaacgt 148  Q
    ||||||||||||  |||| |||||| |||||||||| | | |||| | ||||| |||||||||||| |||||| ||||||||    
T  12032482 acaaataacaataaacaa-cttaaagtaaattgcaggaaggaaataacacaaggtatttgttaacctagttcgatgcaacgt 12032402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 9031549 - 9031517
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  9031549 tttgttaacccagttcggtgcaacgtcacctac 9031517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 11918597 - 11918363
Alignment:
Q  22 aggacaccacgaatgtcgaatgtaatgacaagatatcgtgacatcacaaataacaatttacaaacttaaattaaattgcagaatgtaaatgatacaagtt 121  Q
    |||||||||  ||||||||||| |||| ||| | ||||| ||| |||||||||| ||  |||| |||||| ||||||| || | |||||| | ||||  |    
T  11918597 aggacaccagtaatgtcgaatgcaatgtcaaaacatcgtaacaacacaaataaccataaacaa-cttaaagtaaattgtaggaagtaaataacacaaagt 11918499  T
Q  122 atttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgcgt-aa 220  Q
    |||||||||| ||||| |||||||| ||| |||||| || ||||| |||||| |  |||||||  || | ||||| | |||||||||||||||  || ||    
T  11918498 atttgttaactcagttgggtgcaacatcacctacatctgggggcagccaagccatgaaggaaa--tattgtaatagttttagtttgaagtcctatgtaaa 11918401  T
Q  221 caacctccggtttacttgccttcacacctaatcattacc 259  Q
    ||||||| ||||||| ||||||  |||||||||| ||||    
T  11918400 caacctctggtttac-tgccttggcacctaatcactacc 11918363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 2392952 - 2392860
Alignment:
Q  117 aagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaa 209  Q
    ||||| |||||||| ||||||||||||||||||| |||| | |||||||  ||||||||  || |||||| ||||||||| ||||||||||||    
T  2392952 aagttgtttgttaatccagttcggtgcaacgtcacctacgtttgagggctaccaagctaagaatgaaattcactataatagtattagtttgaa 2392860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 12505689 - 12505785
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatat-gagggcatccaagctagaaaggaaatttactataataatattagtttgaag 210  Q
    ||||| |||||||||||||||||||||| ||||||| |||||| | | ||||  ||||||||| |||||||| |||||||||| ||| |||||||||    
T  12505689 acaagatatttgttaacccagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataatagtatcagtttgaag 12505785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 12484259 - 12484355
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatat-gagggcatccaagctagaaaggaaatttactataataatattagtttgaag 210  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| | | ||||  ||||||||| |||||||| |||||||||| ||| |||||||||    
T  12484259 acaagatatttgttaaccaagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataatagtatcagtttgaag 12484355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 9739794 - 9739752
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacat 157  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  9739794 acaagttgtttgttaacctagttcggtgcaacgtcatctacat 9739752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 259
Target Start/End: Complemental strand, 21383694 - 21383556
Alignment:
Q  119 gttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtttgaagtcctgcgt 218  Q
    |||||||| |||||||||| ||||||||||||  ||| | |  || |  |||||| || ||||||||||||||||||| ||||||||||||| | ||| |    
T  21383694 gttatttgataacccagtttggtgcaacgtcacatacgtctt-ggactaccaagccaggaaggaaatttactataatagtattagtttgaag-catgcat 21383597  T
Q  219 -aacaacctccggtttacttgccttcacacctaatcattacc 259  Q
     |||||||||| || |||| | ||||||||||||||| ||||    
T  21383596 aaacaacctccagtctactag-cttcacacctaatcactacc 21383556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 2076495 - 2076528
Alignment:
Q  122 atttgttaacccagttcggtgcaacgtcatctac 155  Q
    ||||||||||||||||||||||||||||| ||||    
T  2076495 atttgttaacccagttcggtgcaacgtcacctac 2076528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 2082914 - 2082947
Alignment:
Q  122 atttgttaacccagttcggtgcaacgtcatctac 155  Q
    ||||||||||||||||||||||||||||| ||||    
T  2082914 atttgttaacccagttcggtgcaacgtcacctac 2082947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 30226076 - 30226109
Alignment:
Q  124 ttgttaacccagttcggtgcaacgtcatctacat 157  Q
    ||||||||||||||||||||||||||| ||||||    
T  30226076 ttgttaacccagttcggtgcaacgtcacctacat 30226109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 7620071 - 7620103
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  7620071 tttgttaacccagttcggtgcaacgtcacctac 7620103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 9564247 - 9564279
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  9564247 tttgttaacccagttcggtgcaacgtcacctac 9564279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 11628630 - 11628662
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  11628630 tttgttaacccagttcggtgcaacgtcacctac 11628662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 14975423 - 14975455
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  14975423 tttgttaacccagttcggtgcaacgtcacctac 14975455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 14984662 - 14984694
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  14984662 tttgttaacccagttcggtgcaacgtcacctac 14984694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 15404899 - 15404931
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  15404899 tttgttaacccagttcggtgcaacgtcacctac 15404931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 15414273 - 15414305
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  15414273 tttgttaacccagttcggtgcaacgtcacctac 15414305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 49086783 - 49086690
Alignment:
Q  100 cagaatgtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactata 193  Q
    ||||| ||||| || ||||||  |||||||||||||||||||||||||||| |||||| || ||||  |||||| || || |||||| ||||||    
T  49086783 cagaaagtaaaagacacaagtcgtttgttaacccagttcggtgcaacgtcacctacatgtgggggctaccaagccaggaaagaaattcactata 49086690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 4650397 - 4650294
Alignment:
Q  106 gtaaatgatacaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatattagtt 205  Q
    |||||||| |||||||||||||||| | ||||  ||||||||||| |||||| | ||||  ||||||  || ||||||||  ||||||||| ||||||||    
T  4650397 gtaaatgacacaagttatttgttaatctagttatgtgcaacgtcacctacat-ttaggggctccaagtcaggaaggaaatccactataatagtattagtt 4650299  T
Q  206 tgaag 210  Q
    |||||    
T  4650298 tgaag 4650294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 21433930 - 21434017
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatatta 202  Q
    |||||||||||| ||||||| ||| ||||||| ||| |||||| ||||||||| ||||  |  ||||||||  ||||||||| |||||    
T  21433930 acaagttatttgctaacccaattcagtgcaacttcacctacatctgagggcattcaagtcaagaaggaaatccactataatagtatta 21434017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 25123322 - 25123409
Alignment:
Q  115 acaagttatttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaatttactataataatatta 202  Q
    ||||| ||||||||||| || ||||||| ||||||| |||||| || |||||| ||||| |  ||||||||  ||||||||| |||||    
T  25123322 acaaggtatttgttaacacaattcggtgtaacgtcacctacatgtgggggcattcaagccatgaaggaaatccactataatagtatta 25123409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 33062376 - 33062437
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctacatatgagggcatccaagctagaaaggaaat 185  Q
    |||||||||||||||||||||||||||| |||| | || ||||  |||||| |||||||||||    
T  33062376 tttgttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccagaaaggaaat 33062437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 17038238 - 17038270
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  17038238 tttgttaacccagttcggtgcaacgtcacctac 17038270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 52436988 - 52436956
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  52436988 tttgttaacccagttcggtgcaacgtcacctac 52436956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 17141 - 17109
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  17141 tttgttaacccagttcggtgcaacgtcacctac 17109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 53093 - 53061
Alignment:
Q  123 tttgttaacccagttcggtgcaacgtcatctac 155  Q
    |||||||||||||||||||||||||||| ||||    
T  53093 tttgttaacccagttcggtgcaacgtcacctac 53061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University