View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15508_low_1 (Length: 764)
Name: NF15508_low_1
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15508_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 342 - 746
Target Start/End: Complemental strand, 23340162 - 23339758
Alignment:
| Q |
342 |
gatacagcttccttactaaatatattaaagggacaaacaagataattcaatatagttaagggacattttactacttgttctgaaatctattaaatctatg |
441 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23340162 |
gatacagcttccttattaagtatattaaagggacaaacaagataattcaatatagttaagggacattttactaagtgttctgaaatctattaaatctatg |
23340063 |
T |
|
| Q |
442 |
caaagtaagttttagctttaaacattataaattggtcatatctttttctatttgatacatgcaaaagaaagggaaatatatggctaaacttctgacgttt |
541 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23340062 |
caaagtaagtttgagctttaaacattttaaagtggtcatatctttttctatttgatacatgcaaaagaaagggaaatatatggctaaacttctgacgttt |
23339963 |
T |
|
| Q |
542 |
gtttatgttatgatatactttttgtccctatttcttgttacaaaggggggtaagaaatttttcattacgtgaaattgtattctttacttcttatgtaatc |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23339962 |
gtttatgttatgatatactttttgtccctatttcttgttacaaaggggggtaagaaatttttcattacgtgaaattgtattctttacttcttatgtaatc |
23339863 |
T |
|
| Q |
642 |
ttctatcccctttaatttgtaacattcnnnnnnnnnnnnnctcattacagcacacgttgaatgtcataatgattctgcttgtgaaaaaacagttaagtgt |
741 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23339862 |
ttctatcccctttaatttgtaacattctttttccttttttctcattacagcacacgttgaatgtcataatgattctgcttgtgaaaaaacagttaagtgt |
23339763 |
T |
|
| Q |
742 |
atgct |
746 |
Q |
| |
|
||||| |
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|
| T |
23339762 |
atgct |
23339758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 351 - 668
Target Start/End: Original strand, 23359392 - 23359700
Alignment:
| Q |
351 |
tccttactaaatatattaaagggacaaacaagataattcaatatagttaagggacattttactacttgttctgaaatctattaaatctatgcaaagtaag |
450 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||| |||| |||||||||||||| |
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| T |
23359392 |
tccttactaagtatattaaagagacaaacaagataattcaatatagttaaggggcattttaccaagtgttctaaaat---------ctatgcaaagtaag |
23359482 |
T |
|
| Q |
451 |
ttttagctttaaacattataaattggtcatatctttttctatttgatacatgcaaaagaaagggaaatatatggctaaacttctgacgtttgtttatgtt |
550 |
Q |
| |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23359483 |
tttgagctttaaacattataaaatggtcatatctttttctatttgatacatgcaaaagaaagggaaatatatggctaaacttgtgacgtttgtttatgtt |
23359582 |
T |
|
| Q |
551 |
atgatatactttttgtccctatttcttgttacaaaggggggtaagaaatttttcattacgtgaaattgtattctttacttcttatgtaatcttctatccc |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23359583 |
atgatatactttttgtccctatttcttgttacaaaggggggtaagaaatttttcattacgtgaaattgtattctttacttcttatgtaatcttctatccc |
23359682 |
T |
|
| Q |
651 |
ctttaatttgtaacattc |
668 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
23359683 |
ctttaatttgtaacattc |
23359700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 23340480 - 23340239
Alignment:
| Q |
10 |
ctagtagataacagtaatcgctgtggagacaataca--taataatttagtagttgaaacaacttagcgcacttactaaatttgtcatcatataacattgt |
107 |
Q |
| |
|
|||||||| |||| ||||| |||||||||| ||||| || ||||||| |||||||| || ||||| | ||||||||||||||||||||| ||||||||| |
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|
| T |
23340480 |
ctagtagaaaacaataatctctgtggagacgatacacatactaatttactagttgaagcagcttagtgtacttactaaatttgtcatcatgtaacattgt |
23340381 |
T |
|
| Q |
108 |
ttctcattatgtgtataagagaaaaacaaaatgnnnnnnnnnnnnnnnnnnnaaattacttattgatagaagaggggtcatatgttcgaacaacattata |
207 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23340380 |
ttctccttatgtgtgcaagagaaaaacaaaatgttttttatattatttttttaaattacttattgatagaagaggggtcatatgttcgaacaacattata |
23340281 |
T |
|
| Q |
208 |
atttaacctcccactaaggttaaaaaattatcctaccttttt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23340280 |
atttaacctcccactaaggttaaaaaattatcctaccttttt |
23340239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 351 - 564
Target Start/End: Complemental strand, 23592407 - 23592193
Alignment:
| Q |
351 |
tccttactaaa-tatattaaagggacaaacaagataattcaatatagttaagggacattttactacttgttctgaaatctattaaatctatgcaaagtaa |
449 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||| |||||||||||| || |||||| || |||| | ||||||||| ||| | | |||| || |
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|
| T |
23592407 |
tccttactaaagtatattaaagggacaaacaatataattaaatatagttaagagatattttattatgtgttttaaaatctatttaatatgtataaagaaa |
23592308 |
T |
|
| Q |
450 |
gttttagctttaaacattataaattggtcatatctttttctatttgatacatgcaaaagaaagggaaatatatggctaaacttctgacgtttgtttatgt |
549 |
Q |
| |
|
|||| || ||||||||||||||| ||||||| || |||||||||||| ||| |||| || ||||||||||||||||||||| ||| |||| | ||||| |
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|
| T |
23592307 |
gtttgagatttaaacattataaagtggtcatctccttttctatttgaaacaattaaaataaggggaaatatatggctaaacttatgatgtttttctatgt |
23592208 |
T |
|
| Q |
550 |
tatgatatacttttt |
564 |
Q |
| |
|
||||||||||||||| |
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|
| T |
23592207 |
tatgatatacttttt |
23592193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 23359202 - 23359294
Alignment:
| Q |
164 |
tacttattgatagaagagggg-tcatatgttcgaacaacattataatttaacc-tcccactaaggttaaaaaattatcctacctttttaatat |
254 |
Q |
| |
|
||||| |||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |
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|
| T |
23359202 |
tacttcttgatagaagggggggtcacatgttcgaacaacattataatttaaccttcttactaaggttaaaaaattatccgacctttttaatat |
23359294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 668
Target Start/End: Complemental strand, 23591994 - 23591952
Alignment:
| Q |
626 |
tacttcttatgtaatcttctatcccctttaatttgtaacattc |
668 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
23591994 |
tacttcttatgtaatctcctttcccctttaatttgtaacattc |
23591952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 351 - 668
Target Start/End: Original strand, 33177853 - 33178166
Alignment:
| Q |
351 |
tccttactaaatatattaaagggacaaacaagataattcaatatagttaagggacattttactacttgttctgaaatctattaaatctatgcaaagtaag |
450 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||| |
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|
| T |
33177853 |
tccttactaggtatattaaagggacgaacaagataattcaatatagttaagggacattttaccaagtgtgctaaaatctattaaatctatgcaaagtaag |
33177952 |
T |
|
| Q |
451 |
ttttagctttaaacattataaattggtcatatctttttctatttgatacatgcaaaagaaagggaaatatatggctaaacttctgacgtttgtttatgtt |
550 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
33177953 |
----agctttaaacattataaagtggtcatatcgtttcctatttgatacatgcaaaagaa-gggaaatatatggctaaatttatgacgtttgtttatgtt |
33178047 |
T |
|
| Q |
551 |
atgatatactttttgtccctatttcttgttacaaaggggggtaagaaatttttcattacg-tgaaattgtattctttacttcttatgtaatcttctatcc |
649 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||| | | |||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
33178048 |
atgatctactttttgtctctatttcttgttacaaaggggggtaagaattgtttcattatgttaaaattgtattctttacttcttatgtagtcttctgtcc |
33178147 |
T |
|
| Q |
650 |
cctttaatttgtaacattc |
668 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33178148 |
cctttaatttgtaacattc |
33178166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 33177682 - 33177768
Alignment:
| Q |
164 |
tacttattgatagaagagggg-tcatatgttcgaacaacattataatttaacctcccactaaggttaaaaaattatcctaccttttt |
249 |
Q |
| |
|
||||| |||||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
33177682 |
tacttcttgatagaagtgggggtcacattttcgaacaacattataatttaacctcccactaaggttaaaaagttatccgaccttttt |
33177768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 746
Target Start/End: Original strand, 33178202 - 33178250
Alignment:
| Q |
698 |
ttgaatgtcataatgattctgcttgtgaaaaaacagttaagtgtatgct |
746 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
33178202 |
ttgaatgtcatagtgattctgcttgtgaaacaacagttaagtgtgtgct |
33178250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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