View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15508_low_10 (Length: 281)
Name: NF15508_low_10
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15508_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 3299037 - 3299272
Alignment:
| Q |
18 |
atcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttg |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3299037 |
atcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttg |
3299136 |
T |
|
| Q |
118 |
ttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3299137 |
ttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttact |
3299236 |
T |
|
| Q |
218 |
ttgcttgatccatttaccttgacccactgtttctta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
3299237 |
ttgcttgatccatttaccttgacccactgtttctta |
3299272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 3391930 - 3392165
Alignment:
| Q |
18 |
atcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttg |
117 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3391930 |
atcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttg |
3392029 |
T |
|
| Q |
118 |
ttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttact |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3392030 |
ttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttact |
3392129 |
T |
|
| Q |
218 |
ttgcttgatccatttaccttgacccactgtttctta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
3392130 |
ttgcttgatccatttaccttgacccactgtttctta |
3392165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 90 - 253
Target Start/End: Complemental strand, 1164186 - 1164023
Alignment:
| Q |
90 |
ttttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcat |
189 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
1164186 |
ttttttctgttgaaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttat |
1164087 |
T |
|
| Q |
190 |
ttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttctta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1164086 |
ttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttctta |
1164023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 90 - 253
Target Start/End: Original strand, 1849580 - 1849743
Alignment:
| Q |
90 |
ttttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
1849580 |
ttttttctgttgaaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttat |
1849679 |
T |
|
| Q |
190 |
ttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttctta |
253 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1849680 |
ttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccgctgtttctta |
1849743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 38987301 - 38987487
Alignment:
| Q |
80 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
179 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| ||||||||| |||||||||||||||| |
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|
| T |
38987301 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttctttgggtccaaatattggtc |
38987400 |
T |
|
| Q |
180 |
ctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagt |
266 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38987401 |
ctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagt |
38987487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 266
Target Start/End: Original strand, 40417871 - 40418077
Alignment:
| Q |
63 |
atatgattcctcctcaa---gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttc |
159 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||| ||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| |||||| |
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|
| T |
40417871 |
atatgattcctcctgaaagtgaaagatacctttttcgtgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttc |
40417970 |
T |
|
| Q |
160 |
tttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgct |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40417971 |
tttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgct |
40418070 |
T |
|
| Q |
260 |
catcagt |
266 |
Q |
| |
|
||||||| |
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|
| T |
40418071 |
catcagt |
40418077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 39726023 - 39726200
Alignment:
| Q |
80 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
179 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |
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|
| T |
39726023 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg--- |
39726119 |
T |
|
| Q |
180 |
ctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagt |
266 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39726120 |
------tcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagt |
39726200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 39879442 - 39879602
Alignment:
| Q |
97 |
tgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtact |
196 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |||| || ||| |
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|
| T |
39879442 |
tgttaaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg---------tcatatgcact |
39879532 |
T |
|
| Q |
197 |
agggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39879533 |
agggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagt |
39879602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 39399520 - 39399664
Alignment:
| Q |
91 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
190 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||||| |||||||| | || |||||||||| |||||| |||| ||||||||| |
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|
| T |
39399520 |
tttttttgttgaaatcgtccccatttgctgcggggatttgatttttctgcctcctgatgttgctgcttcgttcggtgcaaa---------tattgtcata |
39399610 |
T |
|
| Q |
191 |
tgtactagggttgccaaaacatt---tactttgcttgatccatttaccttgacc |
241 |
Q |
| |
|
|| |||||||||||||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
39399611 |
tgcactagggttgccaaaaaaattactactttgcttgatccatttaccttgacc |
39399664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 39168522 - 39168662
Alignment:
| Q |
91 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
190 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| || ||||| |||| |||||| || |
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|
| T |
39168522 |
tttttttgttgaaatcgtcccaattttctgcggagatttgatttttctgccccctaatattgctgctactctcggtgcaaa---------tattgttata |
39168612 |
T |
|
| Q |
191 |
tgtactagggttgccaaaacatttactttgcttgatccatttaccttgac |
240 |
Q |
| |
|
|| |||||||||||||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
39168613 |
tgcactagggttgccaaaaaaattactttacttgatccatttaccttgac |
39168662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 40596251 - 40596302
Alignment:
| Q |
91 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcct |
142 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
40596251 |
tttttctgttgaaatcgtccccatttgctacggggatttgatttttctgcct |
40596302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 91 - 252
Target Start/End: Complemental strand, 25912766 - 25912605
Alignment:
| Q |
91 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
190 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| ||||||||||| |||||||| | || |||||||||||||| || |||||||||||||||||||||| |
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|
| T |
25912766 |
tttttttgttgaaatcgtccccattttctgctgggatttgatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatt |
25912667 |
T |
|
| Q |
191 |
tgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttctt |
252 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
25912666 |
tgcactagggttgccaaaacatttactttacttgatccatttaccttgactcattgtttctt |
25912605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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