View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15508_low_12 (Length: 273)

Name: NF15508_low_12
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15508_low_12
NF15508_low_12
[»] chr5 (3 HSPs)
chr5 (18-273)||(24394777-24395032)
chr5 (52-142)||(22651983-22652072)
chr5 (126-242)||(22652175-22652292)
[»] chr3 (10 HSPs)
chr3 (69-265)||(12019471-12019670)
chr3 (30-142)||(19583557-19583670)
chr3 (185-265)||(2165849-2165932)
chr3 (49-142)||(27716722-27716816)
chr3 (53-130)||(8532984-8533061)
chr3 (38-140)||(49834023-49834124)
chr3 (84-138)||(22449859-22449914)
chr3 (76-138)||(43901729-43901791)
chr3 (18-70)||(43901524-43901576)
chr3 (184-265)||(19583832-19583915)
[»] chr7 (5 HSPs)
chr7 (50-241)||(10309284-10309473)
chr7 (122-241)||(11406812-11406932)
chr7 (49-140)||(12484673-12484765)
chr7 (49-140)||(12657287-12657379)
chr7 (49-126)||(12506119-12506196)
[»] chr6 (12 HSPs)
chr6 (126-267)||(22917801-22917946)
chr6 (49-141)||(18386250-18386343)
chr6 (126-267)||(22902960-22903102)
chr6 (126-267)||(22885002-22885144)
chr6 (49-142)||(31136467-31136561)
chr6 (20-140)||(21671501-21671621)
chr6 (20-140)||(21678917-21679037)
chr6 (126-267)||(2401411-2401564)
chr6 (49-140)||(26947824-26947916)
chr6 (49-138)||(13484049-13484138)
chr6 (184-242)||(10374680-10374738)
chr6 (18-54)||(3356653-3356689)
[»] chr4 (4 HSPs)
chr4 (20-140)||(56079323-56079446)
chr4 (49-138)||(12493017-12493106)
chr4 (49-141)||(6095549-6095642)
chr4 (49-140)||(39668106-39668198)
[»] chr1 (1 HSPs)
chr1 (49-138)||(25123744-25123833)
[»] chr2 (4 HSPs)
chr2 (18-142)||(19124883-19125006)
chr2 (127-265)||(20186747-20186889)
chr2 (18-70)||(45550513-45550565)
chr2 (184-265)||(18593727-18593811)
[»] scaffold0054 (1 HSPs)
scaffold0054 (126-267)||(8519-8661)
[»] scaffold0157 (1 HSPs)
scaffold0157 (49-138)||(27371-27460)
[»] chr8 (1 HSPs)
chr8 (184-265)||(14423853-14423936)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 24395032 - 24394777
Alignment:
Q  18 caaagaaagagtattttagagttttgtgtctttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24395032 caaagaaagagtattttagagttttgtgtctttgttaagccttatgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagat 24394933  T
Q  118 gatttgtttagttgagttgtatttgtgaatgctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcatt 217  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||    
T  24394932 gatttgtttagttgagttttatttgtgaatgttttaaagcttttaagcaaagagtatgttttgtttattggagtgtgtctccttcttggttgtattcatt 24394833  T
Q  218 gtaatcacgggttgtgtgattgagaaagtgagagggatctcatatctaagtgtgtc 273  Q
    ||||||||| |||||||||||||||||||||||||| ||| | ||||||| |||||    
T  24394832 gtaatcacgagttgtgtgattgagaaagtgagaggggtctaacatctaagcgtgtc 24394777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 22651983 - 22652072
Alignment:
Q  52 ttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtt-tagttgagttgtatttg 142  Q
    ||||||||||| |||||||||| |||||||| ||||   ||  ||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  22651983 ttaagccttgttctttattttgtatacctctatgtggtgtg--attgattatcaaagcactaagatgatttgttctagttgagttgtatttg 22652072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 22652175 - 22652292
Alignment:
Q  126 tagttgagttgtatttgtgaat-gctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgtaatca 224  Q
    ||||||||||||| |||||||| ||| | ||||||||||||||| |||| |        |||||||||||||| ||||||| |||||||  |||||||||    
T  22652175 tagttgagttgtacttgtgaatcgctctgaagcttttaagcaaacagtaggttttatttattggagtgtgtctgcttcttgattgtattatttgtaatca 22652274  T
Q  225 cgggttgtgtgattgaga 242  Q
     || |||||| |||||||    
T  22652275 tggtttgtgtaattgaga 22652292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 69 - 265
Target Start/End: Original strand, 12019471 - 12019670
Alignment:
Q  69 ttttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtttagttgagttgtatttgtgaat-gctttaaagcttttaagcaa 167  Q
    ||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| |||| ||    
T  12019471 ttttgtatacctctctgtgtgttgtcattgattatcaaagcagaaagatggtttgtttagttgagttgtatttgtgaatcgctttaaagcttataaggaa 12019570  T
Q  168 atagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgtaatcacgggttgtgtgattg--agaaagtgagagggatctcatatcta 265  Q
    ||||||||        ||||| |||| ||||||| ||  |||||||||||||||||| ||||||||||||||  || ||||||||||| |||||||||||    
T  12019571 atagtatgttttgtttattggtgtgtatctccttttttattgtattcattgtaatcatgggttgtgtgattgaaaggaagtgagaggggtctcatatcta 12019670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 19583557 - 19583670
Alignment:
Q  30 attttagagttttgtgtctttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgttt-ag 128  Q
    |||||||  ||||| ||||||| ||||||||||||||||||||  |||||||||| ||||  ||||||||||||||||||||| | ||| ||||||| ||    
T  19583557 attttaggattttgagtctttgctaagccttgtgctttattttttatacctctctatgtgccgccattgattatcaaagcacatatatggtttgtttgag 19583656  T
Q  129 ttgagttgtatttg 142  Q
    ||||||||||||||    
T  19583657 ttgagttgtatttg 19583670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 2165849 - 2165932
Alignment:
Q  185 ttggagtgtgtctccttcttggttgtattcattgtaatcacgggttgtgtgattgaga--aagtgaga-gggatctcatatcta 265  Q
    ||||||||||||||||||||| ||||| |||||||||||||  |||||||||||||||  |||||||| |||||||||||||||    
T  2165849 ttggagtgtgtctccttcttgattgtaatcattgtaatcacaagttgtgtgattgagaggaagtgagacgggatctcatatcta 2165932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 27716816 - 27716722
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttg-tttagttgagttgtatttg 142  Q
    ||||||||| ||||||||||||||| | |||||||| |||| ||| ||| |||| ||||||||| ||||| |||| |||||||||||||||||||    
T  27716816 ttgttaagctttgtgctttattttgtaaacctctctatgtgctgctattcattagcaaagcacatagatggtttgctttagttgagttgtatttg 27716722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 8533061 - 8532984
Alignment:
Q  53 taagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtttagtt 130  Q
    |||| |||||||| ||||||| |||||| |||||||||||||| | |||||||||||||| |||||||||| ||||||    
T  8533061 taagtcttgtgctgtattttgtatacctatctgtgtgttgccactaattatcaaagcacagagatgatttgcttagtt 8532984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 49834124 - 49834023
Alignment:
Q  38 gttttgtgtctttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttg-tttagttgagttg 136  Q
    |||| ||||||||||||||||||||||||||  ||| |||||||||||  || ||| |||||||||||||||||| |  || |||| |||||||||||||    
T  49834124 gtttcgtgtctttgttaagccttgtgcttta--ttgtatacctctctggttgctgctattgattatcaaagcacataattggtttgttttagttgagttg 49834027  T
Q  137 tatt 140  Q
    ||||    
T  49834026 tatt 49834023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 22449859 - 22449914
Alignment:
Q  84 tgtgtgttgccattgattatcaaagcacaaagatgatttg-tttagttgagttgta 138  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  22449859 tgtgtgttgccattgattatcaaagcacaaagataatttgttttagttgagttgta 22449914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 43901729 - 43901791
Alignment:
Q  76 tacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtttagttgagttgta 138  Q
    ||||||||||  || ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  43901729 tacctctctggttgctgccactgattatcaaagcacatagatgatttgtttagttgagttgta 43901791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 43901524 - 43901576
Alignment:
Q  18 caaagaaagagtattttagagttttgtgtctttgttaagccttgtgctttatt 70  Q
    |||||||| | | |||||| ||||||||||||||||||| |||||||||||||    
T  43901524 caaagaaatattcttttagggttttgtgtctttgttaagacttgtgctttatt 43901576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 19583832 - 19583915
Alignment:
Q  184 attggagtgtgtctccttcttggttgtattcattgtaatcacgggttgtgtgattgaga--aagtgaga-gggatctcatatcta 265  Q
    |||| ||||||||||||| ||| ||||| ||| || |||||| ||||||||||||||||  |||||||| ||||||| |||||||    
T  19583832 attgtagtgtgtctcctt-ttgattgtaatcaatgaaatcacaggttgtgtgattgagaggaagtgagatgggatctaatatcta 19583915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 241
Target Start/End: Original strand, 10309284 - 10309473
Alignment:
Q  50 tgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtttagttgagttgtatttgtgaatg- 148  Q
    ||||||| |||||||||||||||| |||||| | |||||| |  ||||||||  ||||||| | ||||| ||| ||| ||||||||||||||||||||      
T  10309284 tgttaagtcttgtgctttattttgtatacctatttgtgtgctatcattgatt--caaagcatagagatgtttt-tttggttgagttgtatttgtgaatct 10309380  T
Q  149 ctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgtaatcacgggttgtgtgattgag 241  Q
    || ||||||||||||||||| |||| |        |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  10309381 ctctaaagcttttaagcaaagagtaggttttgtttattggagtgtgtctccttcttgattgtattcaatgtaatcacgggttgtgtgattgag 10309473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 11406812 - 11406932
Alignment:
Q  122 tgtttagttgagttgtatttgtgaat-gctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgta 220  Q
    |||||||||||||||||||||||||| ||| | ||||||||||| |||  ||| |        |||||||||||||||||||||| ||||| ||| ||||    
T  11406812 tgtttagttgagttgtatttgtgaatcgctcttaagcttttaaggaaaatgtaggttttatttattggagtgtgtctccttcttgattgtaatcaatgta 11406911  T
Q  221 atcacgggttgtgtgattgag 241  Q
    |||||||||||||||||||||    
T  11406912 atcacgggttgtgtgattgag 11406932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 12484765 - 12484673
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttg-tttagttgagttgtatt 140  Q
    ||||||||||||||||||||||||| |||||| |||  ||  |||||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  12484765 ttgttaagccttgtgctttattttgtatacctttctaggtcatgccattgattatcaaagcacatagatggtttgttttagttgagttgtatt 12484673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 12657379 - 12657287
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttg-tttagttgagttgtatt 140  Q
    ||||||||||| ||||||||||||| ||||||||||  ||  |||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  12657379 ttgttaagcctagtgctttattttgtatacctctctaggtcctgccattgattatcaaagcacaaagatggtttgttttagttaagttgtatt 12657287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 12506196 - 12506119
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgttt 126  Q
    ||||||||||||||||||||||||| |||||| |||  ||  |||||||||||||||||||||||||||| |||||||    
T  12506196 ttgttaagccttgtgctttattttgtatacctttctaggtcatgccattgattatcaaagcacaaagatggtttgttt 12506119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 22917801 - 22917946
Alignment:
Q  126 tagttgagttgtatttgtgaa-tgctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgtaatca 224  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||| |        ||||||||||||||||||||||  |||| |||||| |||||    
T  22917801 tagttgagttgtatttgtgaactgctctaaagcttttaagcaaatagtaggttttatttattggagtgtgtctccttcttgagtgtaatcattgaaatca 22917900  T
Q  225 cgggttgtgtgatt--gagaaagtgaga-gggatctcatatctaag 267  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||    
T  22917901 cgggttgtgtgattaagagaaagtgagatgggatctcatatctaag 22917946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 18386343 - 18386250
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaaga-tgatttgtttagttgagttgtattt 141  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||| || ||  ||||||||||||||||||    
T  18386343 ttgttaagccttgtgctttattttgtacacctctctgtgtgttgccaatgattatcaaagcacatagattgtttcttttagttgagttgtattt 18386250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 22902960 - 22903102
Alignment:
Q  126 tagttgagttgtatttgtgaa-tgctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgtaatca 224  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||| |        ||||||||||||||||||   |  |||| |||||| |||||    
T  22902960 tagttgagttgtatttgtgaactgctctaaagcttttaagcaaatagtaggttttatttattggagtgtgtctcctt---gagtgtaatcattgaaatca 22903056  T
Q  225 cgggttgtgtgatt--gagaaagtgaga-gggatctcatatctaag 267  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||    
T  22903057 cgggttgtgtgattaagagaaagtgagatgggatctcatatctaag 22903102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 22885002 - 22885144
Alignment:
Q  126 tagttgagttgtatttgtgaa-tgctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgtaatca 224  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||  |        ||||||||||||||||||   |  |||| |||||| |||||    
T  22885002 tagttgagttgtatttgtgaactgctctaaagcttttaagcaaatagtgggttttatttattggagtgtgtctcctt---gagtgtaatcattgaaatca 22885098  T
Q  225 cgggttgtgtgatt--gagaaagtgaga-gggatctcatatctaag 267  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||    
T  22885099 cgggttgtgtgattaagagaaagtgagatgggatctcatatctaag 22885144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 31136467 - 31136561
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttg-tttagttgagttgtatttg 142  Q
    |||||||| ||||| |||||||||  |||||||| ||||||||||||||||||| ||||||||| ||||| |||| ||||||||| |||||||||    
T  31136467 ttgttaaggcttgtactttattttttatacctctttgtgtgttgccattgattaccaaagcacatagatggtttgttttagttgaattgtatttg 31136561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 21671501 - 21671621
Alignment:
Q  20 aagaaagagtattttagagttttgtgtctttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattat-caaagcacaaagatg 118  Q
    |||||||||| |||||| |||| || |||||||||||||||||||||||  ||| |||||||||||  |||| | ||||||||| ||||||||| || ||    
T  21671501 aagaaagagtcttttagggtttcgtatctttgttaagccttgtgcttta--ttgtatacctctctggttgttacaattgattatacaaagcacatagttg 21671598  T
Q  119 atttgtt-tagttgagttgtatt 140  Q
     |||||| |||||||||||||||    
T  21671599 gtttgttgtagttgagttgtatt 21671621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 21678917 - 21679037
Alignment:
Q  20 aagaaagagtattttagagttttgtgtctttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattat-caaagcacaaagatg 118  Q
    |||||||||| |||||| |||| || |||||||||||||||||||||||  ||| |||||||||||  |||| | ||||||||| ||||||||| || ||    
T  21678917 aagaaagagtcttttagggtttcgtatctttgttaagccttgtgcttta--ttgtatacctctctggttgttacaattgattatacaaagcacatagttg 21679014  T
Q  119 atttgtt-tagttgagttgtatt 140  Q
     |||||| |||||||||||||||    
T  21679015 gtttgttgtagttgagttgtatt 21679037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 267
Target Start/End: Complemental strand, 2401564 - 2401411
Alignment:
Q  126 tagttgagttgtatttgtgaatg-ctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggtt--------gtattcat 216  Q
    |||||||||||||||| |||||  |||||||||||||||||||| ||||||        |||||||||||||||||||||| ||        |||| | |    
T  2401564 tagttgagttgtatttatgaatcactttaaagcttttaagcaaagagtatgttttgtttattggagtgtgtctccttcttgatttcttgattgtatcctt 2401465  T
Q  217 tgtaatcacgggttgtgtgattgaga--aagtgaga-gggatctcatatctaag 267  Q
    |||||||||||| |||||||||||||  |||||||| | |||||||||||||||    
T  2401464 tgtaatcacgggatgtgtgattgagaggaagtgagatgagatctcatatctaag 2401411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 26947824 - 26947916
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgattt-gtttagttgagttgtatt 140  Q
    ||||||||||||||||||||||||| | |||||| || ||| ||||  ||||||||||| |||| ||||| |||  |||||||||||||||||    
T  26947824 ttgttaagccttgtgctttattttgtacacctctttgcgtgctgccgctgattatcaaaacacatagatggtttattttagttgagttgtatt 26947916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 13484138 - 13484049
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtttagttgagttgta 138  Q
    ||||||||  ||| ||||||||||| ||| |||||| |||| || ||||||||||||||  | | ||||| |||||||||||||||||||    
T  13484138 ttgttaagttttgggctttattttgtatatctctctatgtgatgtcattgattatcaaattatagagatggtttgtttagttgagttgta 13484049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 10374680 - 10374738
Alignment:
Q  184 attggagtgtgtctccttcttggttgtattcattgtaatcacgggttgtgtgattgaga 242  Q
    |||||||||||||||| | ||| |||||||  |||||||||| | ||||||||||||||    
T  10374680 attggagtgtgtctccatattgtttgtatttgttgtaatcacagattgtgtgattgaga 10374738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 3356653 - 3356689
Alignment:
Q  18 caaagaaagagtattttagagttttgtgtctttgtta 54  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  3356653 caaagaaagagtcttttagagtttcgtgtctttgtta 3356689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 56079446 - 56079323
Alignment:
Q  20 aagaaagagtattttagagttttgtgtctttgttaagccttgtgctttattttgcatacctctctgt--gtgttgccattgattatcaaagcacaaagat 117  Q
    |||||||||| ||| || ||||  |||| |||||||||| |||||||||||||| ||||||||||||  |||||| ||  ||||||||||||||||||||    
T  56079446 aagaaagagtctttcagggtttcatgtccttgttaagccatgtgctttattttgtatacctctctgtgtgtgttgtcaccgattatcaaagcacaaagat 56079347  T
Q  118 gatttgtt-tagttgagttgtatt 140  Q
    |||||||| |||||||||||||||    
T  56079346 gatttgttatagttgagttgtatt 56079323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 12493106 - 12493017
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtttagttgagttgta 138  Q
    ||||||||||| ||||||||||||| | ||||||||| ||||||| | |||||||||||||||| || || |||||||||| ||||||||    
T  12493106 ttgttaagcctcgtgctttattttgtacacctctctgggtgttgcaactgattatcaaagcacataggtggtttgtttagtagagttgta 12493017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 6095549 - 6095642
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttg-tttagttgagttgtattt 141  Q
    ||||||||| ||||| ||||||||| |||||||  |||||| ||||| ||||||||||| |||||||||  |||| ||||||||||||||||||    
T  6095549 ttgttaagctttgtgttttattttgtatacctcaatgtgtgctgccactgattatcaaaccacaaagattgtttgttttagttgagttgtattt 6095642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 39668106 - 39668198
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgt-ttagttgagttgtatt 140  Q
    |||||||| |||||||||||||||| |||||| ||||  |||| ||| || ||||||||||||| ||||| | ||| ||||||||||||||||    
T  39668106 ttgttaagtcttgtgctttattttgtatacctatctggatgttaccactgtttatcaaagcacagagatggtatgtgttagttgagttgtatt 39668198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 25123833 - 25123744
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtttagttgagttgta 138  Q
    |||| |||| ||||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||| |||||||||| ||||    
T  25123833 ttgtcaagctttgtgctttattttgtatacctctatgtgtgttgccactgattatcaaagcacatagatgatttttttagttgagctgta 25123744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 19125006 - 19124883
Alignment:
Q  18 caaagaaagagtattttagagttttgtgtctttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagat 117  Q
    |||||||||||| |||||| |||| |||||||||||||||||| ||||| |  ||| |||||||||||  | |||| |||||||||||||||||| || |    
T  19125006 caaagaaagagtcttttagggtttcgtgtctttgttaagccttatgcttga--ttgaatacctctctgattcttgctattgattatcaaagcacatagtt 19124909  T
Q  118 gatttg-tttagttgagttgtatttg 142  Q
    | |||| |||||||||||||||||||    
T  19124908 ggtttgatttagttgagttgtatttg 19124883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 20186889 - 20186747
Alignment:
Q  127 agttgagttgtatttgtgaatg-ctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgtaatcac 225  Q
    ||||||||||||||||| |||  || ||||| ||||||||||| ||||||        |||||||| ||||||||||||| ||||| |||||||||||||    
T  20186889 agttgagttgtatttgtcaatctctctaaagattttaagcaaagagtatgttttgtttattggagtatgtctccttcttgattgtaatcattgtaatcac 20186790  T
Q  226 gggttgtgtgattgaga--aagtgaga-gggatctcatatcta 265  Q
     |||||||| |||||||  |||||||| | |||||||||||||    
T  20186789 aggttgtgttattgagaggaagtgagatgtgatctcatatcta 20186747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 45550565 - 45550513
Alignment:
Q  18 caaagaaagagtattttagagttttgtgtctttgttaagccttgtgctttatt 70  Q
    |||||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  45550565 caaagaaagagtcttttagggtttcgtgtctttgttaagccttgtgctttatt 45550513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 18593811 - 18593727
Alignment:
Q  184 attggagtgtgtctccttcttggttgtattcattgtaatcacgggttgtgtgattgaga--aagtgaga-gggatctcatatcta 265  Q
    ||||||||||||||| || ||| |||||||  |||||||||| || |||||||||||||  |||||||| |||||||||||||||    
T  18593811 attggagtgtgtctcatttttgattgtatttgttgtaatcacaggatgtgtgattgagaggaagtgagatgggatctcatatcta 18593727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 8519 - 8661
Alignment:
Q  126 tagttgagttgtatttgtgaa-tgctttaaagcttttaagcaaatagtatgnnnnnnnnattggagtgtgtctccttcttggttgtattcattgtaatca 224  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||  |        ||||||||||||||||||   |  |||| |||||| |||||    
T  8519 tagttgagttgtatttgtgaactgctctaaagcttttaagcaaatagttggttttatttattggagtgtgtctcctt---gagtgtaatcattgaaatca 8615  T
Q  225 cgggttgtgtgatt--gagaaagtgaga-gggatctcatatctaag 267  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||    
T  8616 cgggttgtgtgattaagagaaagtgagatgggatctcatatctaag 8661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 27371 - 27460
Alignment:
Q  49 ttgttaagccttgtgctttattttgcatacctctctgtgtgttgccattgattatcaaagcacaaagatgatttgtttagttgagttgta 138  Q
    ||||||||||| ||||||||||||| | ||||||||| ||||||| | |||||||||||||||| || || |||||||||| ||||||||    
T  27371 ttgttaagcctcgtgctttattttgtacacctctctgggtgttgcaactgattatcaaagcacataggtggtttgtttagtagagttgta 27460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 14423936 - 14423853
Alignment:
Q  184 attggagtgtgtctccttcttggttgtattcattgtaatcacgggttgtgtgattg--agaaagtgaga-gggatctcatatcta 265  Q
    |||||||||||||||||| ||| || || |||||| ||||||||||||||||||||  || |||||||| ||| |||||||||||    
T  14423936 attggagtgtgtctcctt-ttgattttaatcattgaaatcacgggttgtgtgattgacaggaagtgagatggggtctcatatcta 14423853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University