View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15508_low_13 (Length: 272)

Name: NF15508_low_13
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15508_low_13
NF15508_low_13
[»] chr5 (4 HSPs)
chr5 (13-254)||(33589223-33589475)
chr5 (48-113)||(43391089-43391154)
chr5 (57-120)||(22497692-22497755)
chr5 (66-120)||(4428968-4429022)
[»] chr1 (3 HSPs)
chr1 (50-148)||(19023308-19023408)
chr1 (18-120)||(4816713-4816815)
chr1 (22-139)||(5299419-5299538)
[»] chr4 (1 HSPs)
chr4 (32-148)||(29542179-29542297)
[»] chr2 (1 HSPs)
chr2 (68-127)||(34120917-34120976)
[»] chr7 (2 HSPs)
chr7 (82-141)||(10486562-10486623)
chr7 (32-120)||(8178051-8178139)
[»] chr3 (1 HSPs)
chr3 (42-120)||(25500956-25501034)
[»] chr8 (2 HSPs)
chr8 (82-120)||(2704034-2704072)
chr8 (42-120)||(15074378-15074456)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 33589223 - 33589475
Alignment:
Q  13 aatatatgaaatcaaattgaaaacgtggcgacgatcatacaatttt-----------gatacccttgctaagttatgggggacataatttgtttgtctcc 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||           |||||||||||||||||||||||||||||||||| ||||||||    
T  33589223 aatatatgaaatcaaattgaaaacatggcgacgatcatacaattttgatacccttttgatacccttgctaagttatgggggacataatttgcttgtctcc 33589322  T
Q  102 taacaaaacttaacttaaattgaaaattgttgttatagagatctacatccaaatatgatagtaccaaattctgaccgcctattaggtctctattaagaca 201  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33589323 taacaaaacttaacttaaattgaaaattgttgtcatagagatctacatccaaatatgatagtaccaaattctgaccgcctattaggtctctattaagaca 33589422  T
Q  202 attcatagttcataggataacagaaattattaggcaatggatagtttctatgt 254  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33589423 tttcatagttcataggataacagaaattattaggcaatggatagtttctatgt 33589475  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 43391089 - 43391154
Alignment:
Q  48 catacaattttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaactta 113  Q
    |||||| |||||| |||||||||||  |||||| ||||||||||| |||||||| || ||||||||    
T  43391089 catacagttttgacacccttgctaaagtatgggcgacataatttgcttgtctccgaataaaactta 43391154  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 22497692 - 22497755
Alignment:
Q  57 ttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaa 120  Q
    |||| ||||||||||||||||| | ||||  ||| | |||||||||||||||||||| ||||||    
T  22497692 ttgacacccttgctaagttatgagtgacaacattcgcttgtctcctaacaaaacttatcttaaa 22497755  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 4429022 - 4428968
Alignment:
Q  66 ttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaa 120  Q
    |||||||| |||||| |||| |||||| ||| |||||||||||||||| ||||||    
T  4429022 ttgctaagctatgggtgacagaatttgcttgcctcctaacaaaacttatcttaaa 4428968  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 19023308 - 19023408
Alignment:
Q  50 tacaattttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaa--ttgaaaattgttgttatagagatctac 147  Q
    |||||||||||  |||| |||||| |||| | || ||||||||||||||||||||||||||||| ||||||  |||||||||||||| ||||||| ||||    
T  19023308 tacaattttgactccctagctaagctatgagtgatataatttgtttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaatagagacctac 19023407  T
Q  148 a 148  Q
    |    
T  19023408 a 19023408  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 4816815 - 4816713
Alignment:
Q  18 atgaaatcaaattgaaaacgtggcgacgatcatacaattttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaactt 117  Q
    ||||||||||||  || || ||| ||||| |||||||||||||  ||||||||||| |||||| ||||||||||| ||||||||| ||| || ||| |||    
T  4816815 atgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataatttgcttgtctccttacataatttatctt 4816716  T
Q  118 aaa 120  Q
    |||    
T  4816715 aaa 4816713  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 5299538 - 5299419
Alignment:
Q  22 aatcaaattgaaaacgtggcgacgatcatacaattttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaa- 120  Q
    ||||||||||||||||||| ||||| || |||||||||   |||||||||||  ||||| |||  |||| | |||||| ||||||||| ||| ||||||     
T  5299538 aatcaaattgaaaacgtggtgacgagcacacaattttgcctcccttgctaagcaatgggcgaccgaattcgcttgtcttctaacaaaatttatcttaaag 5299439  T
Q  121 -ttgaaaattgttgttatag 139  Q
     ||| |||||||||||||||    
T  5299438 tttggaaattgttgttatag 5299419  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 29542297 - 29542179
Alignment:
Q  32 aaaacgtggcgacgatcatacaattttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaa--ttgaaaatt 129  Q
    ||||| ||| ||||| | |||||||||||  |||| ||||||  ||||| ||||||||||| |||| ||||||||||| ||| ||||||  |||||||||    
T  29542297 aaaacatggtgacgagcgtacaattttgactccctagctaagccatgggcgacataatttgcttgtatcctaacaaaatttatcttaaagtttgaaaatt 29542198  T
Q  130 gttgttatagagatctaca 148  Q
    ||||| ||||||| |||||    
T  29542197 gttgtaatagagacctaca 29542179  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 34120917 - 34120976
Alignment:
Q  68 gctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaattgaaaa 127  Q
    ||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| ||||    
T  34120917 gctaagtcatgggcgacataatttgtttgtctcctaacaaaatttatcttaaatttaaaa 34120976  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 10486562 - 10486623
Alignment:
Q  82 gacataatttgtttgtctcctaacaaaacttaacttaaa--ttgaaaattgttgttatagag 141  Q
    ||||||||||| |||||||||||||||||||| ||||||  |||||||||||||| ||||||    
T  10486562 gacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaatagag 10486623  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 8178051 - 8178139
Alignment:
Q  32 aaaacgtggcgacgatcatacaattttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaa 120  Q
    ||||||||||||| | |||||||||||||  |||| |||||  ||||||  ||| |||||| |||||||||| ||||||||| ||||||    
T  8178051 aaaacgtggcgactagcatacaattttgactccctagctaatgtatgggcaacaaaatttgcttgtctcctagcaaaacttatcttaaa 8178139  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 25501034 - 25500956
Alignment:
Q  42 gacgatcatacaattttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaa 120  Q
    ||||| |||||||||||||| ||||||||||  |||||| |||| |||||| ||||||||| ||| || ||| ||||||    
T  25501034 gacgagcatacaattttgatgcccttgctaaactatgggcgacacaatttgcttgtctccttacataatttatcttaaa 25500956  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 2704034 - 2704072
Alignment:
Q  82 gacataatttgtttgtctcctaacaaaacttaacttaaa 120  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  2704034 gacataatttgcttgtctcctaacaaaacttatcttaaa 2704072  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 15074378 - 15074456
Alignment:
Q  42 gacgatcatacaattttgatacccttgctaagttatgggggacataatttgtttgtctcctaacaaaacttaacttaaa 120  Q
    ||||| ||||||||||||||  ||||||||   |||| | |||| |||||| |||||| ||||||||||||| ||||||    
T  15074378 gacgagcatacaattttgatgtccttgctatactatgagcgacacaatttgcttgtcttctaacaaaacttatcttaaa 15074456  T

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