View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15508_low_14 (Length: 271)
Name: NF15508_low_14
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15508_low_14 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 14065649 - 14065889
Alignment:
| Q |
19 |
acatactatttattcgatgttatatcatttattcaaagtatataaaactctacaaactatgcttagttgctgctgcaaggtcgttttaaagattttcaat |
118 |
Q |
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| T |
14065649 |
acatactatttatccgatgttatatcatttattcaaagtatataaaactctacaaactaagattagttgctgctgcaaggtcgttttaaagattttcaat |
14065748 |
T |
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| Q |
119 |
gagatagtgatacactcttggaggtattaatcttgctcttgaataaactttgctatatacgataactta--atatagattattgtcatggcaaaacaaca |
216 |
Q |
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| T |
14065749 |
gagatagtgaaacactcttggaggtattaatcctgctcttgaat-aactttgctatatatgataacttaatatatagattattgccatggcaaaacaaca |
14065847 |
T |
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| Q |
217 |
tcaatttatgaacacgagcatgtgaattttatgaaagtccct |
258 |
Q |
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| T |
14065848 |
tcaatttatgaagacgagcatgtgaattttatgaaagtccct |
14065889 |
T |
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Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 23880044 - 23880200
Alignment:
| Q |
19 |
acatactatttattcgatgttatatcatttattcaaagtatataaaactctacaaactatgcttagttgctgctgcaaggtcgttttaaagattttcaat |
118 |
Q |
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| T |
23880044 |
acatactatttattcgatgttatatcatttattcaaagtatataaaactctacaaactaagcttagttgctgccgcaaggtcgttttaaagattttcaat |
23880143 |
T |
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| Q |
119 |
gagatagtgatacactcttggaggtattaatcttgctcttgaataaactttgctata |
175 |
Q |
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| T |
23880144 |
gagatagtgatacactcttggaggtattaatcctgctcttgaataaactttgctata |
23880200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 19488 - 19332
Alignment:
| Q |
19 |
acatactatttattcgatgttatatcatttattcaaagtatataaaactctacaaactatgcttagttgctgctgcaaggtcgttttaaagattttcaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || |
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| T |
19488 |
acatactatttattcgatgttatatcatttattcaaagtatgtaaaactctacaaactaagctttgttgctgctgcaaggtcgttttaaagattttcgat |
19389 |
T |
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| Q |
119 |
gagatagtgatacactcttggaggtattaatcttgctcttgaataaactttgctata |
175 |
Q |
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| T |
19388 |
gagatagtgatacactcttggaggtattaatccagctcttgaataaactttgctata |
19332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 360657 - 360579
Alignment:
| Q |
89 |
tgctgcaaggtcgttttaaagattttcaatgagatagtgatacactcttggaggtattaatcttgctcttgaataaact |
167 |
Q |
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|||| ||||| |||| | |||||| | |||||| |||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
360657 |
tgctacaaggccgttctgaagattctgaatgaggtagtgaaacactcttggaggtattagtcttgctcttgaataaact |
360579 |
T |
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