View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15508_low_3 (Length: 489)
Name: NF15508_low_3
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15508_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 26 - 473
Target Start/End: Original strand, 30484615 - 30485058
Alignment:
| Q |
26 |
gtatttttgtcttaggtataattgtgacaagaaagctaataatgaagattaattaacttgatcatatttctatcctttcaaatcaaatgttaaatcttat |
125 |
Q |
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| T |
30484615 |
gtatttttgtcttaggtataattgtgacaagaaagctaataatgaagattaattaacttgatcatatttctatcctttcaaatcaaatgttaaatcttat |
30484714 |
T |
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| Q |
126 |
ttaaagtggcaattgtttctcttcttggaagtacctttaagaggaaagcatgagtatcagaagcagtttgtaggtccccagttatgtaattgcttatgtt |
225 |
Q |
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| T |
30484715 |
ttgaagtggcaattgtttctcttcttggaagtacctttaagaggaaagcatgagtatcagaagcagtttgtaggtccccagttatgtaattgcttatgtt |
30484814 |
T |
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| Q |
226 |
atttgagtaagagaagccaacgccagttggtgaatccaaatatataatgttggaaatctgaaatcaataatagataataaatttaaatgatttgcatctt |
325 |
Q |
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| T |
30484815 |
atttgagtaagagaagccaacgccagttggtgaatccaaatatataatgttggaaatctgaaatcaataatagataataaatttaaatgatttgcatctt |
30484914 |
T |
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| Q |
326 |
ggttttccgagatatgggtgattttaaaagctagctagagtgggtataaaattgttctttttacttgtgaatataaaatacaaatcttaaaatttaaaca |
425 |
Q |
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| T |
30484915 |
ggttttccgagatatgggtgattttaaa----agctagagtgggtataaaattgttctttttacttgtgaatataaaatacaaatcttaaaatttaaaca |
30485010 |
T |
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| Q |
426 |
gcccgattttgtatttgattagacgagatatgggtgatgcatgtgact |
473 |
Q |
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| T |
30485011 |
gcccgattttgtatttgattagacgagatatgggtgatgcatgtgact |
30485058 |
T |
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