View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15508_low_5 (Length: 323)
Name: NF15508_low_5
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15508_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 154 - 308
Target Start/End: Original strand, 35823369 - 35823523
Alignment:
| Q |
154 |
gtgagtcataagtaagcaacttaatcagttagaaagagttgaggacagttttagatgtgatccttcatataaccataaaaaagaagaaagaaagatcagg |
253 |
Q |
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| T |
35823369 |
gtgagtcataagtaagcaacttaatcagttagaaagagttgaggacagttttagatgtgatccttcatataaccataaaaaagaagaaagaaagatcagg |
35823468 |
T |
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| Q |
254 |
ggatagagaacttttacatgaaatcattcagggtcaatacaaatgggatattcat |
308 |
Q |
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| T |
35823469 |
ggatagagaacttttacatgaaatcattcagggtcaatacaaatgggatattcat |
35823523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 35823216 - 35823300
Alignment:
| Q |
1 |
tttcaagcttaccctttgcttctttaagtgggccagtatctcttgcagcctaaagcaaatggaaacagatgtctagttagatgag |
85 |
Q |
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| T |
35823216 |
tttcaagcttaccctttgcttctttaagtgggccagtatctcttgcagcctaaagcaaatggaaacagatgtctagttagatgag |
35823300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 35823774 - 35823858
Alignment:
| Q |
1 |
tttcaagcttaccctttgcttctttaagtgggccagtatctcttgcagcctaaagcaaatggaaacagatgtctagttagatgag |
85 |
Q |
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| T |
35823774 |
tttcaagcatactctttgcttcacgaagtgcgccagtatctcttgcagcctaaagcaaatggaaacagatgttcacttagatgag |
35823858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 35823929 - 35824077
Alignment:
| Q |
155 |
tgagtcataagtaagcaacttaatcagttagaaagagttgaggacagttttagatgtgatccttcatataaccataaaaaagaagaaagaaagatcaggg |
254 |
Q |
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| T |
35823929 |
tgagtcaaaaataagccacttaatcggttcgaacaaggtgaggatagttttagatttgatccttcatataagcaccaaaaag----aagaaagatcaggg |
35824024 |
T |
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| Q |
255 |
gatagagaacttttacatgaaatcattcagggtcaatacaaatgggatattca |
307 |
Q |
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| T |
35824025 |
gacagagaacttgcgcatgaattaatccagggtcagtacagataggatattca |
35824077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47699051 - 47698982
Alignment:
| Q |
1 |
tttcaagcttaccctttgcttctttaagtgggccagtatctcttgcagcctaaagcaaatggaaacagat |
70 |
Q |
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| T |
47699051 |
tttcaagcttatcctttgcttctttaagtgcaccagtttctcttgaagcctaaagcacatggaaacagat |
47698982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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