View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15508_low_6 (Length: 318)

Name: NF15508_low_6
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15508_low_6
NF15508_low_6
[»] chr3 (1 HSPs)
chr3 (13-303)||(36770348-36770638)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 36770348 - 36770638
Alignment:
Q  13 agcataggtactactcgaacccatatcataaaaaacaacatgcctcgactcattggagaaatccttatcaatcccatactgcaacgccgcaccggagtat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36770348 agcataggtactactcgaacccatatcataaaaaacaacatgcctcgactcattggagaaatccttatcaatcccatactgcaacgccgcaccggagtat 36770447  T
Q  113 tcattaatcaacgaaagcacattaatccccgccaactccgccgcctgaagcaatcctctccgttccgcttgtccaaaataaggcggaacagcaatcaccg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36770448 tcattaatcaacgaaagcacattaatccccgccaactccgccgcctgaagcaatcctctccgttccgcttgtccaaaataaggcggaacagcaatcaccg 36770547  T
Q  213 cgtctttgatcggaattttcgaatgaaactccgccaaattcgcagcataagtcaaaatcatcgccgttaattcctcaggcgaatactctgt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36770548 cgtctttgatcggaattttcgaatgaaactccgccaaattcgcagcataagtcaaaatcatcgccgttaattcctcaggcgaatactctgt 36770638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University