View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15508_low_8 (Length: 298)
Name: NF15508_low_8
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15508_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 3299037 - 3299301
Alignment:
| Q |
18 |
atcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttg |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3299037 |
atcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttg |
3299136 |
T |
|
| Q |
118 |
ttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3299137 |
ttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttact |
3299236 |
T |
|
| Q |
218 |
ttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccctt |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||| |
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| T |
3299237 |
ttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccctt |
3299301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 3391930 - 3392194
Alignment:
| Q |
18 |
atcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttg |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3391930 |
atcttatagtggacatacttccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttg |
3392029 |
T |
|
| Q |
118 |
ttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttact |
217 |
Q |
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| T |
3392030 |
ttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttact |
3392129 |
T |
|
| Q |
218 |
ttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccctt |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||| |
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| T |
3392130 |
ttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccctt |
3392194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 90 - 282
Target Start/End: Complemental strand, 1164186 - 1163994
Alignment:
| Q |
90 |
ttttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcat |
189 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |
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| T |
1164186 |
ttttttctgttgaaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttat |
1164087 |
T |
|
| Q |
190 |
ttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccctt |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||||| |
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| T |
1164086 |
ttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccctt |
1163994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 90 - 282
Target Start/End: Original strand, 1849580 - 1849772
Alignment:
| Q |
90 |
ttttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |
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| T |
1849580 |
ttttttctgttgaaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttat |
1849679 |
T |
|
| Q |
190 |
ttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccctt |
282 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||| |
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|
| T |
1849680 |
ttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccgctgtttcttaaaggctgatcgttactgggatgcaccctt |
1849772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 80 - 279
Target Start/End: Original strand, 38987301 - 38987500
Alignment:
| Q |
80 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
179 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| ||||||||| |||||||||||||||| |
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| T |
38987301 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttctttgggtccaaatattggtc |
38987400 |
T |
|
| Q |
180 |
ctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacc |
279 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
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| T |
38987401 |
ctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacc |
38987500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 63 - 279
Target Start/End: Original strand, 40417871 - 40418090
Alignment:
| Q |
63 |
atatgattcctcctcaa---gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttc |
159 |
Q |
| |
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|||||||||||||| || ||||||| | ||||| ||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| |||||| |
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| T |
40417871 |
atatgattcctcctgaaagtgaaagatacctttttcgtgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttc |
40417970 |
T |
|
| Q |
160 |
tttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtct |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
40417971 |
tttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgct |
40418070 |
T |
|
| Q |
260 |
gatcagtactggaatgcacc |
279 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
40418071 |
catcagtactggaaagcacc |
40418090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 279
Target Start/End: Original strand, 39726023 - 39726213
Alignment:
| Q |
80 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
179 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |
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|
| T |
39726023 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg--- |
39726119 |
T |
|
| Q |
180 |
ctattgtcatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacc |
279 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
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|
| T |
39726120 |
------tcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacc |
39726213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 279
Target Start/End: Original strand, 39879442 - 39879615
Alignment:
| Q |
97 |
tgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtact |
196 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |||| || ||| |
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| T |
39879442 |
tgttaaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg---------tcatatgcact |
39879532 |
T |
|
| Q |
197 |
agggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
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|
| T |
39879533 |
agggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacc |
39879615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 91 - 279
Target Start/End: Original strand, 39399520 - 39399702
Alignment:
| Q |
91 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
190 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||||| |||||||| | || |||||||||| |||||| |||| ||||||||| |
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| T |
39399520 |
tttttttgttgaaatcgtccccatttgctgcggggatttgatttttctgcctcctgatgttgctgcttcgttcggtgcaaa---------tattgtcata |
39399610 |
T |
|
| Q |
191 |
tgtactagggttgccaaaacatt---tactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcacc |
279 |
Q |
| |
|
|| |||||||||||||||| | | |||||||||||||||||||||||||||| | || ||||||| ||||||| |||||||||||||| |
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|
| T |
39399611 |
tgcactagggttgccaaaaaaattactactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacc |
39399702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 282
Target Start/End: Original strand, 39168522 - 39168704
Alignment:
| Q |
91 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
190 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| || ||||| ||||||||| | || |
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|
| T |
39168522 |
tttttttgttgaaatcgtcccaattttctgcggagatttgatttttctgccccctaatattgctgctactctcggtgcaaatattgtt---------ata |
39168612 |
T |
|
| Q |
191 |
tgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccctt |
282 |
Q |
| |
|
|| |||||||||||||||| | ||||||| |||||||||||||||||||| | || ||||||| ||||| ||||||||||||||||||| |
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|
| T |
39168613 |
tgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcaccctt |
39168704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 40596251 - 40596302
Alignment:
| Q |
91 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcct |
142 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
40596251 |
tttttctgttgaaatcgtccccatttgctacggggatttgatttttctgcct |
40596302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 91 - 282
Target Start/End: Complemental strand, 25912766 - 25912575
Alignment:
| Q |
91 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
190 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| ||||||||||| |||||||| | || |||||||||||||| || |||||||||||||||||||||| |
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|
| T |
25912766 |
tttttttgttgaaatcgtccccattttctgctgggatttgatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatt |
25912667 |
T |
|
| Q |
191 |
tgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccctt |
282 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
25912666 |
tgcactagggttgccaaaacatttactttacttgatccatttaccttgactcattgtttcttgaaggctgatcagtactggaatgcaccctt |
25912575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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