View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15508_low_9 (Length: 297)

Name: NF15508_low_9
Description: NF15508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15508_low_9
NF15508_low_9
[»] chr4 (57 HSPs)
chr4 (8-278)||(50514635-50514898)
chr4 (132-278)||(33951638-33951787)
chr4 (131-278)||(35808418-35808565)
chr4 (156-278)||(55669704-55669826)
chr4 (162-278)||(45688714-45688830)
chr4 (166-278)||(19328950-19329062)
chr4 (156-278)||(23765543-23765665)
chr4 (162-268)||(47188697-47188803)
chr4 (156-278)||(41956235-41956357)
chr4 (166-259)||(10100154-10100247)
chr4 (132-278)||(26040382-26040521)
chr4 (162-278)||(51266895-51267011)
chr4 (167-278)||(20811239-20811350)
chr4 (183-278)||(32131134-32131229)
chr4 (156-278)||(30475390-30475512)
chr4 (166-278)||(53566972-53567087)
chr4 (164-267)||(31168107-31168210)
chr4 (167-278)||(31754914-31755025)
chr4 (164-278)||(26831808-26831921)
chr4 (192-278)||(34016626-34016712)
chr4 (166-278)||(34316744-34316857)
chr4 (162-278)||(2362600-2362718)
chr4 (163-268)||(45088042-45088144)
chr4 (171-259)||(32584560-32584648)
chr4 (163-278)||(27839328-27839443)
chr4 (171-262)||(52341581-52341672)
chr4 (171-278)||(35675212-35675319)
chr4 (165-243)||(9693528-9693606)
chr4 (166-268)||(40436056-40436158)
chr4 (156-278)||(54339078-54339199)
chr4 (162-263)||(15986237-15986338)
chr4 (162-263)||(20456540-20456641)
chr4 (172-251)||(1457584-1457663)
chr4 (209-275)||(3769831-3769897)
chr4 (195-265)||(35927309-35927379)
chr4 (172-276)||(30617930-30618034)
chr4 (162-278)||(31494683-31494799)
chr4 (162-278)||(51018401-51018517)
chr4 (216-278)||(35511202-35511264)
chr4 (226-278)||(19876205-19876257)
chr4 (206-265)||(52021047-52021106)
chr4 (171-265)||(966562-966656)
chr4 (172-278)||(30199808-30199914)
chr4 (130-263)||(36486723-36486856)
chr4 (206-263)||(39418155-39418212)
chr4 (206-278)||(13966574-13966646)
chr4 (171-263)||(39158363-39158455)
chr4 (207-263)||(46823488-46823544)
chr4 (216-263)||(49483122-49483169)
chr4 (221-263)||(11996140-11996182)
chr4 (224-278)||(31487754-31487808)
chr4 (193-278)||(13498139-13498224)
chr4 (206-251)||(25928454-25928499)
chr4 (206-278)||(27545877-27545949)
chr4 (234-275)||(51290473-51290514)
chr4 (210-263)||(53484634-53484687)
chr4 (215-278)||(23260728-23260792)
[»] chr1 (53 HSPs)
chr1 (163-278)||(11385953-11386068)
chr1 (156-278)||(27209740-27209862)
chr1 (169-278)||(34874545-34874654)
chr1 (162-278)||(50154444-50154560)
chr1 (164-278)||(6170570-6170684)
chr1 (156-278)||(7190494-7190616)
chr1 (169-278)||(28277501-28277610)
chr1 (162-278)||(4940759-4940875)
chr1 (163-278)||(41147497-41147612)
chr1 (171-278)||(49901906-49902013)
chr1 (160-278)||(22346256-22346374)
chr1 (165-268)||(47895308-47895411)
chr1 (160-278)||(43433744-43433862)
chr1 (162-278)||(24140744-24140860)
chr1 (166-278)||(49508753-49508864)
chr1 (167-278)||(932176-932287)
chr1 (172-278)||(33929947-33930053)
chr1 (173-278)||(47655390-47655495)
chr1 (166-278)||(2125726-2125838)
chr1 (195-278)||(4656020-4656103)
chr1 (183-278)||(42607343-42607438)
chr1 (164-278)||(31975460-31975574)
chr1 (161-278)||(11385829-11385946)
chr1 (162-278)||(52396414-52396529)
chr1 (182-278)||(28850929-28851024)
chr1 (164-278)||(45721728-45721839)
chr1 (182-278)||(50295452-50295549)
chr1 (198-278)||(32213908-32213988)
chr1 (169-278)||(29966800-29966910)
chr1 (193-278)||(40845253-40845338)
chr1 (206-278)||(41898878-41898950)
chr1 (171-258)||(17402928-17403015)
chr1 (166-278)||(48938611-48938722)
chr1 (171-278)||(51424137-51424244)
chr1 (156-278)||(14331802-14331924)
chr1 (183-249)||(44286864-44286930)
chr1 (156-278)||(44359691-44359813)
chr1 (183-278)||(26469601-26469696)
chr1 (171-245)||(40920165-40920239)
chr1 (156-278)||(43168106-43168228)
chr1 (162-276)||(8244068-8244173)
chr1 (184-248)||(30222613-30222678)
chr1 (172-258)||(27210705-27210792)
chr1 (221-278)||(5945450-5945507)
chr1 (168-212)||(9055897-9055941)
chr1 (206-278)||(16691309-16691381)
chr1 (206-278)||(41492924-41492996)
chr1 (167-278)||(8892790-8892901)
chr1 (216-254)||(44043500-44043538)
chr1 (194-239)||(10161024-10161069)
chr1 (206-251)||(46296231-46296276)
chr1 (206-262)||(23328437-23328493)
chr1 (171-251)||(34644145-34644225)
[»] chr3 (39 HSPs)
chr3 (157-278)||(51817334-51817455)
chr3 (164-278)||(32415542-32415656)
chr3 (167-278)||(8715523-8715634)
chr3 (167-278)||(9067410-9067521)
chr3 (172-278)||(4759872-4759978)
chr3 (164-278)||(8847474-8847588)
chr3 (160-278)||(36730175-36730293)
chr3 (162-278)||(35306303-35306419)
chr3 (166-278)||(46317461-46317573)
chr3 (163-278)||(44570408-44570523)
chr3 (166-275)||(10854834-10854943)
chr3 (164-278)||(25102344-25102457)
chr3 (157-278)||(12051004-12051125)
chr3 (166-266)||(37509086-37509186)
chr3 (166-275)||(20227405-20227514)
chr3 (166-278)||(29915597-29915709)
chr3 (166-278)||(29964750-29964862)
chr3 (175-262)||(44695709-44695796)
chr3 (166-278)||(52570755-52570869)
chr3 (167-278)||(12905305-12905415)
chr3 (165-249)||(31647278-31647362)
chr3 (171-278)||(21324496-21324602)
chr3 (171-263)||(34060803-34060895)
chr3 (193-263)||(41345977-41346047)
chr3 (206-278)||(18809-18881)
chr3 (206-278)||(18950-19022)
chr3 (172-263)||(45899580-45899672)
chr3 (195-262)||(11316970-11317037)
chr3 (215-259)||(26850535-26850579)
chr3 (206-264)||(34750293-34750351)
chr3 (206-251)||(50420699-50420744)
chr3 (171-278)||(11675293-11675398)
chr3 (206-278)||(39974828-39974900)
chr3 (179-254)||(46160500-46160575)
chr3 (209-256)||(49976185-49976232)
chr3 (178-264)||(271202-271288)
chr3 (220-262)||(6822837-6822879)
chr3 (206-263)||(12060096-12060153)
chr3 (222-278)||(1803919-1803975)
[»] chr5 (48 HSPs)
chr5 (156-278)||(34546743-34546865)
chr5 (156-278)||(35653277-35653399)
chr5 (159-278)||(4421986-4422105)
chr5 (163-278)||(13951258-13951373)
chr5 (156-278)||(16315556-16315676)
chr5 (156-277)||(12914140-12914261)
chr5 (170-278)||(5151468-5151576)
chr5 (167-278)||(35945222-35945333)
chr5 (161-278)||(4962538-4962655)
chr5 (182-278)||(43414086-43414182)
chr5 (164-278)||(25568314-25568428)
chr5 (165-278)||(25017313-25017426)
chr5 (165-268)||(39692984-39693087)
chr5 (156-278)||(39567868-39567990)
chr5 (170-278)||(28143145-28143253)
chr5 (167-278)||(3639097-3639207)
chr5 (164-278)||(8410115-8410229)
chr5 (166-278)||(12068196-12068307)
chr5 (162-278)||(27823233-27823346)
chr5 (183-263)||(338801-338881)
chr5 (195-278)||(1759821-1759904)
chr5 (196-263)||(37243852-37243919)
chr5 (134-278)||(39167538-39167682)
chr5 (169-232)||(4838259-4838322)
chr5 (171-278)||(20184570-20184677)
chr5 (204-278)||(1479158-1479232)
chr5 (172-258)||(39335454-39335540)
chr5 (175-277)||(10406772-10406873)
chr5 (171-263)||(678430-678522)
chr5 (230-278)||(15915871-15915919)
chr5 (192-278)||(10017644-10017727)
chr5 (171-278)||(19894798-19894905)
chr5 (167-238)||(15915014-15915083)
chr5 (206-278)||(38610314-38610386)
chr5 (165-239)||(39042096-39042170)
chr5 (195-278)||(6823774-6823858)
chr5 (211-278)||(40099352-40099420)
chr5 (216-259)||(12349585-12349628)
chr5 (206-257)||(24288502-24288553)
chr5 (206-257)||(24373668-24373719)
chr5 (216-263)||(28599691-28599738)
chr5 (206-244)||(3015106-3015144)
chr5 (192-237)||(16899635-16899680)
chr5 (211-263)||(27535114-27535167)
chr5 (206-278)||(3241975-3242047)
chr5 (218-258)||(5058772-5058812)
chr5 (206-278)||(17168691-17168763)
chr5 (207-263)||(28996229-28996285)
[»] chr7 (55 HSPs)
chr7 (169-278)||(24359730-24359839)
chr7 (162-278)||(29034658-29034774)
chr7 (160-278)||(42222190-42222308)
chr7 (161-278)||(8380411-8380528)
chr7 (132-278)||(27053515-27053662)
chr7 (166-278)||(5240354-5240466)
chr7 (162-278)||(1910215-1910331)
chr7 (160-278)||(8292714-8292832)
chr7 (172-262)||(29687457-29687547)
chr7 (161-278)||(46478578-46478694)
chr7 (158-278)||(7322975-7323095)
chr7 (183-278)||(40763241-40763336)
chr7 (183-278)||(43567528-43567623)
chr7 (167-278)||(49069531-49069642)
chr7 (160-278)||(41188808-41188926)
chr7 (166-275)||(22521561-22521670)
chr7 (163-278)||(36279094-36279206)
chr7 (196-264)||(3681699-3681767)
chr7 (172-278)||(5347994-5348097)
chr7 (191-278)||(22707049-22707136)
chr7 (183-249)||(40194818-40194884)
chr7 (183-278)||(43958105-43958200)
chr7 (192-278)||(46042749-46042834)
chr7 (182-263)||(8258675-8258756)
chr7 (171-256)||(44296945-44297030)
chr7 (194-258)||(31626083-31626147)
chr7 (181-278)||(30538502-30538596)
chr7 (215-278)||(48454844-48454907)
chr7 (171-257)||(18529196-18529282)
chr7 (162-259)||(16082473-16082570)
chr7 (155-244)||(35404310-35404399)
chr7 (166-263)||(48879645-48879742)
chr7 (159-219)||(29959035-29959095)
chr7 (206-278)||(32204197-32204269)
chr7 (164-237)||(16957639-16957711)
chr7 (167-263)||(16931867-16931962)
chr7 (167-263)||(16937250-16937345)
chr7 (167-263)||(30388697-30388793)
chr7 (170-278)||(40066939-40067045)
chr7 (206-278)||(40774264-40774336)
chr7 (216-263)||(4686080-4686127)
chr7 (171-258)||(35239829-35239915)
chr7 (194-264)||(6548533-6548603)
chr7 (163-257)||(10575802-10575896)
chr7 (229-278)||(31360314-31360363)
chr7 (171-244)||(44260558-44260631)
chr7 (206-257)||(5543061-5543112)
chr7 (216-259)||(35003630-35003673)
chr7 (206-249)||(43189688-43189731)
chr7 (215-278)||(44391019-44391082)
chr7 (216-278)||(3720136-3720198)
chr7 (206-251)||(18800197-18800242)
chr7 (221-258)||(46423388-46423425)
chr7 (171-263)||(1907626-1907717)
chr7 (206-258)||(5977757-5977809)
[»] chr2 (44 HSPs)
chr2 (162-278)||(6999173-6999289)
chr2 (162-278)||(16361537-16361653)
chr2 (161-278)||(862559-862676)
chr2 (162-278)||(2966511-2966627)
chr2 (133-278)||(39085814-39085952)
chr2 (161-258)||(17074529-17074626)
chr2 (131-278)||(17118395-17118542)
chr2 (158-278)||(27495090-27495210)
chr2 (164-263)||(23685689-23685788)
chr2 (163-278)||(39401557-39401671)
chr2 (161-258)||(17056099-17056196)
chr2 (161-258)||(17068546-17068643)
chr2 (161-278)||(41436448-41436565)
chr2 (162-258)||(17095108-17095204)
chr2 (165-240)||(11445379-11445454)
chr2 (192-278)||(765172-765258)
chr2 (156-258)||(9201537-9201638)
chr2 (156-278)||(1321132-1321255)
chr2 (191-278)||(17603811-17603898)
chr2 (166-278)||(464770-464883)
chr2 (185-278)||(33864349-33864442)
chr2 (169-249)||(15004905-15004985)
chr2 (166-278)||(33726355-33726467)
chr2 (170-278)||(44173099-44173206)
chr2 (166-278)||(44299703-44299815)
chr2 (168-278)||(35445312-35445423)
chr2 (191-278)||(13997926-13998013)
chr2 (171-278)||(34334183-34334290)
chr2 (171-276)||(2239562-2239667)
chr2 (162-263)||(11659233-11659334)
chr2 (206-263)||(747528-747585)
chr2 (162-239)||(33848957-33849034)
chr2 (156-229)||(41890182-41890255)
chr2 (206-278)||(34220668-34220740)
chr2 (156-278)||(2136401-2136523)
chr2 (171-261)||(29260167-29260257)
chr2 (206-255)||(3454743-3454791)
chr2 (206-278)||(10900272-10900344)
chr2 (227-278)||(11445313-11445364)
chr2 (216-259)||(34512671-34512714)
chr2 (215-249)||(8327004-8327038)
chr2 (183-249)||(2805373-2805441)
chr2 (209-278)||(30831636-30831705)
chr2 (224-277)||(37230253-37230306)
[»] chr6 (24 HSPs)
chr6 (163-278)||(7875203-7875318)
chr6 (165-276)||(7274238-7274349)
chr6 (163-278)||(7880449-7880564)
chr6 (164-278)||(12191466-12191580)
chr6 (130-278)||(10855379-10855519)
chr6 (162-278)||(5578245-5578361)
chr6 (156-240)||(16437642-16437726)
chr6 (156-260)||(26572117-26572221)
chr6 (156-278)||(8324126-8324248)
chr6 (172-258)||(31220369-31220455)
chr6 (163-232)||(32786041-32786110)
chr6 (191-278)||(6866915-6867002)
chr6 (172-258)||(21186059-21186145)
chr6 (166-278)||(12175535-12175646)
chr6 (214-278)||(29692363-29692427)
chr6 (166-255)||(34780023-34780112)
chr6 (194-263)||(28014638-28014707)
chr6 (210-262)||(1947424-1947476)
chr6 (128-189)||(19645941-19645995)
chr6 (164-239)||(29964274-29964349)
chr6 (156-278)||(12226353-12226475)
chr6 (206-263)||(5029489-5029546)
chr6 (206-278)||(27127529-27127601)
chr6 (234-278)||(32786259-32786303)
[»] chr8 (35 HSPs)
chr8 (181-278)||(18068952-18069049)
chr8 (156-278)||(26672755-26672877)
chr8 (165-258)||(10694781-10694874)
chr8 (164-278)||(8018733-8018848)
chr8 (171-278)||(14855406-14855513)
chr8 (183-278)||(26195395-26195490)
chr8 (156-278)||(6433509-6433631)
chr8 (185-278)||(6939152-6939245)
chr8 (169-278)||(19389332-19389441)
chr8 (191-278)||(25249363-25249450)
chr8 (172-278)||(21016079-21016185)
chr8 (164-278)||(4989909-4990020)
chr8 (170-278)||(45337983-45338091)
chr8 (135-249)||(33741525-33741637)
chr8 (164-264)||(37433239-37433338)
chr8 (191-278)||(21016234-21016321)
chr8 (173-268)||(34713953-34714048)
chr8 (200-278)||(26892795-26892873)
chr8 (171-256)||(20212433-20212518)
chr8 (171-263)||(3174436-3174532)
chr8 (183-265)||(30351583-30351666)
chr8 (166-278)||(44874308-44874412)
chr8 (162-263)||(39972189-39972290)
chr8 (171-278)||(7532767-7532872)
chr8 (171-258)||(4308789-4308876)
chr8 (211-278)||(5129478-5129545)
chr8 (171-230)||(7444258-7444317)
chr8 (156-278)||(38869969-38870091)
chr8 (195-258)||(6396315-6396378)
chr8 (215-278)||(20169309-20169372)
chr8 (171-249)||(35973927-35974005)
chr8 (209-254)||(17320000-17320045)
chr8 (216-249)||(39491858-39491891)
chr8 (171-231)||(5300203-5300263)
chr8 (171-259)||(25381708-25381796)
[»] scaffold0002 (1 HSPs)
scaffold0002 (171-268)||(392164-392261)
[»] scaffold0062 (3 HSPs)
scaffold0062 (163-278)||(16794-16908)
scaffold0062 (163-278)||(26962-27076)
scaffold0062 (163-278)||(37128-37242)
[»] scaffold0809 (2 HSPs)
scaffold0809 (182-241)||(4705-4764)
scaffold0809 (233-278)||(4292-4337)
[»] scaffold0144 (1 HSPs)
scaffold0144 (155-278)||(39553-39674)
[»] scaffold0050 (1 HSPs)
scaffold0050 (171-249)||(37430-37507)
[»] scaffold2122 (1 HSPs)
scaffold2122 (207-263)||(655-711)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 50514898 - 50514635
Alignment:
Q  8 ccaagaatatattgcgtttttgttgtcctattaacggtaggcaattttccaatatcctctaacgataaatcccaaacaatgggtggcacatggagtacaa 107  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50514898 ccaaaaatatattgcgtttttgttgtcctattaacggtgggtaattttccaatatcctctaacgataaatcccaaacaatgggtggtacatggagtacaa 50514799  T
Q  108 attagtctacgatatttatcttttgggtcttgctaaccattgtcctcagccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagttt 207  Q
    | |||||||||||||||||||||||||||||||||||||||       |||| || | |||||||||||||||||||||||| |||||||||||| ||||    
T  50514798 aatagtctacgatatttatcttttgggtcttgctaaccatt-------gccccgatgtcaatggttaaggaaaccaaaagtagcatgtttgcattggttt 50514706  T
Q  208 caacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||    
T  50514705 caacaacattttaacttttaaaaagttaaatttatcactttttaccatttttcaatgttatatttctattt 50514635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 132 - 278
Target Start/End: Original strand, 33951638 - 33951787
Alignment:
Q  132 gggtcttgctaaccattgtcctca---gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaa 228  Q
    |||| |||||||||||||||| ||   ||||| |||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||||||| ||||||    
T  33951638 gggttttgctaaccattgtccacaattgccctcagggcaatggttaaggaagccaaaattaacatgtttgtattggtttcaacaacattttaatttttaa 33951737  T
Q  229 aaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||||| || |||||||||| |||| |||||||||    
T  33951738 aaagttaaatttatcacttttcacaattttccaatactatatttctattt 33951787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 35808565 - 35808418
Alignment:
Q  131 tgggtcttgctaaccattgtcctcagccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaa 230  Q
    ||||||||||||||||||| | ||||   | ||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||    
T  35808565 tgggtcttgctaaccattgccatcaggagtcaggacaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaa 35808466  T
Q  231 agttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||| |||| || ||||||||||||||| |||||||||    
T  35808465 agttaaatttatcatttttcacaattttccaatgctatatttctattt 35808418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 55669704 - 55669826
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||  ||| ||||||||||| |||||||||||||||||||||||| |||| |||||    
T  55669704 gccctgagggcaatggttaaggaagccaaaagtagcatgtttgcattgtttttaacaacattttgacttttaaaaagttaaatttatcatttttcaccat 55669803  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||||||||||||| |||||||||    
T  55669804 tttccaatgctatatttctattt 55669826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 45688714 - 45688830
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||    
T  45688714 agggcaatagttaaggaagccaaaagtagcatgtttgcattagtttcaacaacattttgacttttaaaaagttaaatttatcacttttcatcatttttca 45688813  T
Q  262 atgctatctttctattt 278  Q
    ||||||| |||||||||    
T  45688814 atgctatgtttctattt 45688830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 19329062 - 19328950
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||||||  |||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  19329062 caatggttaaggaaggcaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttaaatttatcacatttcaccattttccaatgc 19328963  T
Q  266 tatctttctattt 278  Q
    ||| |||||||||    
T  19328962 tatatttctattt 19328950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 23765543 - 23765665
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| ||| |||| ||||||||| | ||||||| |||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||    
T  23765543 gccctcaggacaattgttaaggaagctaaaagtagcatgtttgcattggtttcaacaacattttgatttttaaaaagttaaatttatcacttttcaccat 23765642  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||||||||||||| |||| ||||    
T  23765643 tttccaatgctatatttcaattt 23765665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 268
Target Start/End: Complemental strand, 47188803 - 47188697
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||    
T  47188803 agggcaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgactttttagaagttaaatttatcacttttcaccattttcca 47188704  T
Q  262 atgctat 268  Q
    || ||||    
T  47188703 atactat 47188697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 41956357 - 41956235
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| || |||||||||||||||  |||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||| | |||    
T  41956357 gccctcagagcaatggttaaggaaggcaaaagtagcatgtttgcattggcttcaacaacattttgacttttaaaaagttaaatttatcatttttcatcat 41956258  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||||||||| ||| |||||||||    
T  41956257 tttccaatgttatatttctattt 41956235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 10100247 - 10100154
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    ||||||||||| || |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  10100247 caatggttaagaaagccaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttataacttttcaccattttc 10100154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 132 - 278
Target Start/End: Complemental strand, 26040521 - 26040382
Alignment:
Q  132 gggtcttgctaaccattgtcctcagccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaa 231  Q
    |||||||||||||||||||||||||        ||| ||||||||||| ||||||||| ||| |||||||| | |||||||| ||||| |||||||||||    
T  26040521 gggtcttgctaaccattgtcctcaga-------gcagtggttaaggaagccaaaagtagcatatttgcattggcttcaacaatattttgacttttaaaaa 26040429  T
Q  232 gttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||| ||||||||||| ||||||||||||| |||| |||||||||    
T  26040428 gttaaacttatcacttttcaccattttccaatactatatttctattt 26040382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 51266895 - 51267011
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    ||||||||| ||||||||  |||||||| |||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||    
T  51266895 agggcaatgattaaggaagtcaaaagtagcatgtttgtattgatttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccatttttca 51266994  T
Q  262 atgctatctttctattt 278  Q
    || |||| |||||||||    
T  51266995 atactatatttctattt 51267011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 20811239 - 20811350
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    ||||||||| ||| ||||||||| ||||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |    
T  20811239 aatggttaaagaagccaaaagtagcatgtttgcattgattttaacaacattttgacttttaaaaagttaaatttatcacttttcaccaatttccaatgtt 20811338  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  20811339 atatttctattt 20811350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 32131134 - 32131229
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||    
T  32131134 aaaagtaacatgtttgcattggtttcaacaacatcttgacttttaaaaagttaaatttatcacttatcaccattttccaatactatatttctattt 32131229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 30475390 - 30475512
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| || ||||| ||||||||| |||||||||| ||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||| |||||    
T  30475390 gccctcagagcaatagttaaggaagccaaaagtaatatgtttgcattggtttcaacaatattttgacatttaaaaagttaaatttatcacttttcaccat 30475489  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||| |||| |||| ||| |||||    
T  30475490 ttttcaatactatatttttattt 30475512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 53567087 - 53566972
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttat---cactttttaccattttccaa 262  Q
    |||| |||||||||  |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||| |||    
T  53567087 caatagttaaggaagtcaaaagtagcatgtttgcatgagtttcaacaacattttaacttttaaaaagttaaatttattagtactttttactatttttcaa 53566988  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  53566987 tgctatatttctattt 53566972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 31168107 - 31168210
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||||| ||| |||||||||  |||||| |||| |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||    
T  31168107 ggcaatggttaaagaagccaaaagtagaatgtttacattggtttcaacaacattttgactttaaaaaaattaaatttatcacttttcaccattttccaat 31168206  T
Q  264 gcta 267  Q
    ||||    
T  31168207 gcta 31168210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 31754914 - 31755025
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    |||||||||||||  |||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| | |||||| |||| ||    
T  31754914 aatggttaaggaagtcaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttaaatttatcacttttcatcatttttcaattct 31755013  T
Q  267 atctttctattt 278  Q
    || ||| |||||    
T  31755014 atatttatattt 31755025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 26831921 - 26831808
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||| ||||| |||  |||||||| |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  26831921 ggcaatcgttaaagaagtcaaaagtagcatgtttgcatt-gtttcaacaacattttaatttttaaaaagataaatttatcactttttaccattttacaat 26831823  T
Q  264 gctatctttctattt 278  Q
      ||| |||||||||    
T  26831822 attatatttctattt 26831808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 34016626 - 34016712
Alignment:
Q  192 atgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  34016626 atgtttgcattgatttcaacaacattttgacttttaaaaagttaaattcatcacttttcaccattttccaatgctatatttctattt 34016712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 34316857 - 34316744
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaa-tttatcactttttaccattttccaatg 264  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||| || ||||| |||||    
T  34316857 caatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttaaattttatcacttttcactatttttcaatg 34316758  T
Q  265 ctatctttctattt 278  Q
     ||| ||| |||||    
T  34316757 ttatatttatattt 34316744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 2362600 - 2362718
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaactttt--aaaaagttaaatttatcactttttaccattttc 259  Q
    ||||||||||||||||||  ||||||||  ||||||||||| |||| ||||||||||| ||||||  ||||| ||||||||||||||||| |||||||||    
T  2362600 agggcaatggttaaggaagtcaaaagtagtatgtttgcattggttttaacaacattttgacttttaaaaaaaattaaatttatcacttttcaccattttc 2362699  T
Q  260 caatgctatctttctattt 278  Q
    |||| |||| ||| |||||    
T  2362700 caatactatatttttattt 2362718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 45088042 - 45088144
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||||||||||||||||||||||  |||||||||||  ||||||||   |||| ||||| ||||| ||||||||||||||||| | ||||||||||    
T  45088042 gggcaatggttaaggaaaccaaaagtagtatgtttgcattgatttcaaca---ttttgactttcaaaaaattaaatttatcacttttcatcattttccaa 45088138  T
Q  263 tgctat 268  Q
    ||||||    
T  45088139 tgctat 45088144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 32584648 - 32584560
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    |||||||||||||||| |||||||||  ||| || |||||||| |||||||||||||||||||| |||| || ||||||||||||||||    
T  32584648 gttaaggaaaccaaaattaacatgttcccatgagattcaacaatattttaacttttaaaaagttgaattcattactttttaccattttc 32584560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 27839443 - 27839328
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||| |||||||   ||||| || |||||||||||| |||| || |||||||| ||||||||||| |||||||||||| |||| | |||||| |||    
T  27839443 gggcaatgattaaggaggtcaaaaatagcatgtttgcattggttttaataacattttgacttttaaaaacttaaatttatcatttttcatcatttttcaa 27839344  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  27839343 tgctatatttctattt 27839328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 52341581 - 52341672
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||||||||||| ||  ||||||||||| | |||||||||||||| ||||||||||||||||||| |||| |||| | ||||||||||    
T  52341581 gttaaggaaaccaaaattagtatgtttgcattggattcaacaacattttgacttttaaaaagttaaattcatcatttttcatcattttccaa 52341672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 35675319 - 35675212
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    |||||| ||| ||||||||  |||||||||||   |||||||| ||||||||||||||||||||||||| ||||||||| || |||| ||||| | || |    
T  35675319 gttaagaaaatcaaaagtagtatgtttgcattgaattcaacaatattttaacttttaaaaagttaaattcatcacttttcactatttcccaatacaatat 35675220  T
Q  271 ttctattt 278  Q
    ||||||||    
T  35675219 ttctattt 35675212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 9693606 - 9693528
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatc 243  Q
    |||||||||||||||  ||||| || |||||||||||| |||||||||| ||||  |||||||||||||||||||||||    
T  9693606 gcaatggttaaggaagtcaaaaatagcatgtttgcattggtttcaacaatatttcgacttttaaaaagttaaatttatc 9693528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 40436056 - 40436158
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||| |||||||||||| ||||||||| || |||||||||| ||||| |  ||||||||||||||||||| | |||| | ||||||  |||||    
T  40436056 caatggttaagaaaaccaaaagtagcatgtttgctttggtttcaacaatattttgatatttaaaaagttaaatttattatttttcatcattttttaatgc 40436155  T
Q  266 tat 268  Q
    |||    
T  40436156 tat 40436158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 54339078 - 54339199
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| || |||||||||||||||  |||||||| ||| ||| |||| ||||||| || ||||| ||||||||||| |||||||||||| |||| |||||    
T  54339078 gccctcagagcaatggttaaggaagtcaaaagtagcatatttacattggtttcaaaaatattttgacttttaaaaaattaaatttatca-ttttcaccat 54339176  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||| ||||| ||| ||| |||||    
T  54339177 ttttcaatgttatatttatattt 54339199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 15986237 - 15986338
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||||||| |||||||  |||||||||||   |||||||| ||| | ||||||||||| ||||||| | ||||||| |||||||| ||    
T  15986237 agggcaatggttaaggaaactaaaagtagaatgtttgcattgaattcaacaatattctgacttttaaaaatttaaattcaccacttttcaccatttttca 15986336  T
Q  262 at 263  Q
    ||    
T  15986337 at 15986338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 20456540 - 20456641
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    ||||||||| ||||||||| |||||||| ||||||||||||   |||||||| |||||||| |||||||| ||||||| || |||||| | |||||| ||    
T  20456540 agggcaatgattaaggaaatcaaaagtagcatgtttgcattgaattcaacaatattttaacatttaaaaatttaaattcataacttttcatcatttttca 20456639  T
Q  262 at 263  Q
    ||    
T  20456640 at 20456641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 1457663 - 1457584
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcacttttta 251  Q
    ||||||||| ||||||||| | |||||||||   |||||||| ||||||||||||||||| |||||||||||| ||||||    
T  1457663 ttaaggaaatcaaaagtaataagtttgcattgaattcaacaatattttaacttttaaaaaattaaatttatcaattttta 1457584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 3769831 - 3769897
Alignment:
Q  209 aacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttcta 275  Q
    ||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||| || ||||||    
T  3769831 aacaatattttaacttttaaaaagtcaaatttatcacttttcaccatttttcaatgcaatatttcta 3769897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 35927379 - 35927309
Alignment:
Q  195 tttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| |||  |||| ||||||||| |||||    
T  35927379 tttgcattagattcaacaatattttaacttttaaaaagttaaattcatcgtttttcaccattttctaatgc 35927309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 30617930 - 30618034
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctt 271  Q
    ||||||||||||||||||  | | ||||||| | |||||||| |||| |||||||||||||||||||| ||  ||||| | ||||| ||||||| || ||    
T  30617930 ttaaggaaaccaaaagtagtaggattgcattggattcaacaatatttgaacttttaaaaagttaaattcattgcttttcatcatttcccaatgcaatatt 30618029  T
Q  272 tctat 276  Q
    |||||    
T  30618030 tctat 30618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 278
Target Start/End: Complemental strand, 31494799 - 31494683
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    ||||||||||||||||||||||||||||| || ||| ||||   ||||||||  ||||  | ||||||||||||||||  |||||||| ||||||| | |    
T  31494799 agggcaatggttaaggaaaccaaaagtaatatatttacattgaattcaacaatgttttgtcatttaaaaagttaaattcttcacttttcaccatttccaa 31494700  T
Q  262 atgctatctttctattt 278  Q
    || | || |||||||||    
T  31494699 atacaatgtttctattt 31494683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 278
Target Start/End: Complemental strand, 51018517 - 51018401
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||| ||||  |||||||  || ||| ||||   ||||||||  |||||| |||||||||||||||||  |||||||| |||||||| ||    
T  51018517 agggcaatggttaaagaaattaaaagtagtatatttacattgaattcaacaatgttttaatttttaaaaagttaaattcttcacttttcaccatttttca 51018418  T
Q  262 atgctatctttctattt 278  Q
    |||| || |||||||||    
T  51018417 atgcaatgtttctattt 51018401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 35511264 - 35511202
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||||| | || |||||||||    
T  35511264 ttttaacttttaaaaagtcaaattcatcacttttcaccattttccaatacaatatttctattt 35511202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 19876257 - 19876205
Alignment:
Q  226 taaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||||||||| || |||||||||| |||| |||||||||    
T  19876257 taaaaagttaaatttatcacttttcactattttccaatactatatttctattt 19876205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 52021047 - 52021106
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    |||||||| |||||||| ||||||||||||||||||||| |||||||  |||| ||||||    
T  52021047 ttcaacaatattttaacatttaaaaagttaaatttatcattttttacagtttttcaatgc 52021106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 966562 - 966656
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    |||||||||| ||||||||  |  ||| |||| | |||||||| ||||||| ||||||||||||||||| || | |||||| |||||| ||||||    
T  966562 gttaaggaaatcaaaagtagtagtttttcattggattcaacaatattttaatttttaaaaagttaaattcataattttttatcatttttcaatgc 966656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 30199914 - 30199808
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctt 271  Q
    ||||| |||| ||||||||   |||| |||| | ||||| || ||||||||||||||||| |||| || ||||||||||| |||||| |||||| || ||    
T  30199914 ttaagaaaactaaaagtaatgagtttacattggattcaataatattttaacttttaaaaaattaatttcatcactttttatcatttttcaatgcaatatt 30199815  T
Q  272 tctattt 278  Q
    | |||||    
T  30199814 tatattt 30199808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 263
Target Start/End: Complemental strand, 36486856 - 36486723
Alignment:
Q  130 ttgggtcttgctaaccattgtcctcagccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaa 229  Q
    |||| ||||||||||||||| ||| | | || |||  |||| ||||||||| |||| |||| || ||| |||    ||||| || ||||| |||||||||    
T  36486856 ttggatcttgctaaccattgccctgatctctcaggataatgattaaggaaatcaaacgtaatatatttacatagaattcaataatattttgacttttaaa 36486757  T
Q  230 aagttaaatttatcactttttaccattttccaat 263  Q
    || |||||||  |||||||| |||||||||||||    
T  36486756 aaattaaattcttcacttttcaccattttccaat 36486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 39418212 - 39418155
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||  |||||||||||||||||| |||  ||||||||||||||||| ||||||    
T  39418212 ttcaacaattttttaacttttaaaaagtcaaacatatcactttttaccattatccaat 39418155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 13966574 - 13966646
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| || | |||||||||||||| ||||| || | |||||||||||||||||||| || ||| |||||    
T  13966574 ttcaacaatatgtcaacttttaaaaagtcaaattcattattttttaccattttccaatgcaatatttatattt 13966646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 39158455 - 39158363
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||| ||||||||  |||||| ||||   || ||||| ||||||| ||||||||||||||||  ||||||||| ||| ||| |||||    
T  39158455 gttaaggaaatcaaaagtagtatgtttacattgaattgaacaatattttaatttttaaaaagttaaatagatcacttttcaccctttcccaat 39158363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 46823488 - 46823544
Alignment:
Q  207 tcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||  |||| ||||||||||||||||||| || |||||| |||||||||||||    
T  46823488 tcaacaattttttgacttttaaaaagttaaattcataacttttcaccattttccaat 46823544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 49483122 - 49483169
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||| ||||||| |||| |||||||||| |||||||||||||    
T  49483122 ttttaactttgaaaaagtcaaatctatcacttttcaccattttccaat 49483169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 11996182 - 11996140
Alignment:
Q  221 acttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||| |||||||||| |||||||||| |||||||||||||    
T  11996182 acttttagaaagttaaatctatcacttttcaccattttccaat 11996140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 31487754 - 31487808
Alignment:
Q  224 tttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||| ||||||||||||||| || ||||| ||||||||| ||| |||||    
T  31487754 tttaaaaagtcaaatttatcacttttaactatttttcaatgctatatttttattt 31487808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 13498224 - 13498139
Alignment:
Q  193 tgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||| |||| | ||||||||  |||| ||||||||||||||||||| |||  | ||||| |||||||||| | || |||||||||    
T  13498224 tgtttacattggattcaacaaagttttgacttttaaaaagttaaattcatcgttctttactattttccaatacaatatttctattt 13498139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 25928454 - 25928499
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcacttttta 251  Q
    |||||||| |||||||| ||||||| |||||||| |||||||||||    
T  25928454 ttcaacaatattttaacatttaaaacgttaaattcatcacttttta 25928499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 27545877 - 27545949
Alignment:
Q  206 ttcaacaacattttaactttt-aaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| ||||||| |||| ||||||||||||| ||||| ||||| |||||| |||||| || |||||||||    
T  27545877 ttcaacaatattttaagttttcaaaaagttaaattcatcac-ttttatcatttttcaatgcaatatttctattt 27545949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 51290473 - 51290514
Alignment:
Q  234 taaatttatcactttttaccattttccaatgctatctttcta 275  Q
    |||||||||||||||| | |||||||||||||||| ||||||    
T  51290473 taaatttatcacttttcatcattttccaatgctatatttcta 51290514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 53484634 - 53484687
Alignment:
Q  210 acaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||||||||||| ||||||||||| |||  ||||| ||||||| ||||    
T  53484634 acaacattttaacttttagaaagttaaattcatctttttttcccatttttcaat 53484687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 23260728 - 23260792
Alignment:
Q  215 attttaacttttaaaaagttaaatttatca-ctttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||  |||||| || ||| |||||    
T  23260728 attttaacttttaaaaagttaaattcatcagcttttcaccatttctcaatgcaatatttttattt 23260792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 11385953 - 11386068
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  11385953 gggcaatggttaagaaaaccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcaatttttaccattttccaa 11386052  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  11386053 tgctatatttctattt 11386068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 27209862 - 27209740
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  27209862 gccctgagggcaatggttaaggaagccaaaagtaggatgtttgcattggtttcaacaacattttaacttttaaaaagttaaatttatcaattttcaccat 27209763  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||||||||| ||| |||||||||    
T  27209762 tttccaatgttatatttctattt 27209740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 34874545 - 34874654
Alignment:
Q  169 tggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctat 268  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  34874545 tggttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaaattaaatttatcacttttcaccattttccaatgctat 34874644  T
Q  269 ctttctattt 278  Q
     |||||||||    
T  34874645 atttctattt 34874654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 50154444 - 50154560
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| ||    
T  50154444 agggtaatggttaaggaagccaaaagtaacatgtttgcattggtttcaacaacattttaacttttaaaaggttaaatttatcattttttatcatttttca 50154543  T
Q  262 atgctatctttctattt 278  Q
    ||||||| ||| |||||    
T  50154544 atgctatatttatattt 50154560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 6170684 - 6170570
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||  | ||||||||||    
T  6170684 ggcaatggttaaggaagtcaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcatttttctctattttccaat 6170585  T
Q  264 gctatctttctattt 278  Q
    ||||| |||||||||    
T  6170584 gctatatttctattt 6170570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 7190616 - 7190494
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| ||| |||||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||    
T  7190616 gcccttaggacaatggttaaggaagctaaaagtagcatgtttgcattagtttcaacaccattttaacttttaaaaagttaaatttatcacttttcatcat 7190517  T
Q  256 tttccaatgctatctttctattt 278  Q
    |||  |||||||| |||||||||    
T  7190516 ttttgaatgctatatttctattt 7190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 28277610 - 28277501
Alignment:
Q  169 tggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctat 268  Q
    |||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||    
T  28277610 tggttaaggaaatcaaaagtaacatgtttgcattgttttcaacaacattttaatttttaaaaagttaaatttatcactttttatcatttttcaatgttat 28277511  T
Q  269 ctttctattt 278  Q
     |||||||||    
T  28277510 atttctattt 28277501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 162 - 278
Target Start/End: Complemental strand, 4940875 - 4940759
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||| |||||||||||||||| || |||||||| ||| |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  4940875 agggcaatagttaaggaaaccaaaaatagcatgtttgtattggttttaacaatattttgacttttaaaaagttaaatttatcacttttaaccattttcca 4940776  T
Q  262 atgctatctttctattt 278  Q
    ||||||| |||||||||    
T  4940775 atgctatatttctattt 4940759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 41147612 - 41147497
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||||||||||||  |||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||| |||    
T  41147612 gggcaatggttaaggaagtcaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttaaattaatcattttttaccatttttcaa 41147513  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  41147512 tgctatatttctattt 41147497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 49901906 - 49902013
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||| |    
T  49901906 gttaaggaagccaaaagtatcatgtttgcattggtttcaacaacgttttaacgtttaaaaagttaaatttatcacttttcaccattttccaatactatat 49902005  T
Q  271 ttctattt 278  Q
    ||||||||    
T  49902006 ttctattt 49902013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 22346374 - 22346256
Alignment:
Q  160 tgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    ||||| |||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||     
T  22346374 tgaggacaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaaattaaatttatcacttttcaccattttt 22346275  T
Q  260 caatgctatctttctattt 278  Q
    |||| |||| |||||||||    
T  22346274 caatactatatttctattt 22346256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 47895308 - 47895411
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatg 264  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||| |||||||| ||||     
T  47895308 gcaatggttaaggaagccaaaagtaacatgtttgcattagtttcaacaatattttgacatttaaaaagttaaatttatcacctttcaccatttttcaata 47895407  T
Q  265 ctat 268  Q
    ||||    
T  47895408 ctat 47895411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 43433744 - 43433862
Alignment:
Q  160 tgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    |||||| ||||||||||||| |||||||||  ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||     
T  43433744 tgagggtaatggttaaggaagccaaaagtagtatgtttgtattggtttcaacaacattttaatttttaaaaagttaaatttatcacttttcaccattttt 43433843  T
Q  260 caatgctatctttctattt 278  Q
     ||| |||| |||||||||    
T  43433844 taatactatatttctattt 43433862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 24140744 - 24140860
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||||| |||||| || |||||||||||| |||||||||||||||| ||||| |||||||||| |||||||| ||| |||||||||||    
T  24140744 agggcaatggttaaggaagccaaaaatagcatgtttgcattggtttcaacaacattttgactttaaaaaagttaagtttatcacgtttcaccattttcca 24140843  T
Q  262 atgctatctttctattt 278  Q
    ||  ||| |||||||||    
T  24140844 atagtatatttctattt 24140860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 49508864 - 49508753
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    |||||||||| ||| ||||||||| |||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  49508864 caatggttaaagaagccaaaagtagcatgtttgcattggtttcgacaatattttgacttttaaaaagttaaatttatcac-tttcaccattttccaatgc 49508766  T
Q  266 tatctttctattt 278  Q
    ||| |||||||||    
T  49508765 tatatttctattt 49508753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 932287 - 932176
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    |||||||||||||   ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||| | ||||||||||||||    
T  932287 aatggttaaggaaggtaaaagtagcatgtttgcattagtttcaacaacattttgacttttaaaaaattaaatttataatttttcatcattttccaatgct 932188  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  932187 atatttctattt 932176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 33929947 - 33930053
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctt 271  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| || ||||| ||||||||| ||    
T  33929947 ttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcagttttcactatttttcaatgctatatt 33930046  T
Q  272 tctattt 278  Q
    | |||||    
T  33930047 tatattt 33930053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 278
Target Start/End: Complemental strand, 47655495 - 47655390
Alignment:
Q  173 taaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatcttt 272  Q
    |||||||  |||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||||  ||    
T  47655495 taaggaaggcaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcaattttcaccatttttcaatgctatactt 47655396  T
Q  273 ctattt 278  Q
    ||||||    
T  47655395 ctattt 47655390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 2125838 - 2125726
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    |||||||||| |||  ||||||||||||| ||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||    
T  2125838 caatggttaaagaagtcaaaagtaacatggttgtatttgtttcatcaacattttgacttttaaaaagttaaatttatcacttttcacaatttttcaatgc 2125739  T
Q  266 tatctttctattt 278  Q
    ||| |||||||||    
T  2125738 tatatttctattt 2125726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 4656020 - 4656103
Alignment:
Q  195 tttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||    
T  4656020 tttgcattagtttcaacaacattttaatttttaaaaagttaaatttatcactttttactattttccaatgttatatttttattt 4656103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 42607438 - 42607343
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||| ||| |||||    
T  42607438 aaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcatttttcaccatttttcaatgctatatttttattt 42607343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 31975460 - 31975574
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||||| || | |||| |||||||||||||||||||| ||||| ||||| | ||||||||||||||||||| ||||||||| |||||| ||||    
T  31975460 ggcaatggttaagaaagctaaaaataacatgtttgcattagttttaacaatattttgatttttaaaaagttaaatttaccactttttatcatttttcaat 31975559  T
Q  264 gctatctttctattt 278  Q
    | ||| |||||||||    
T  31975560 gttatatttctattt 31975574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 11385946 - 11385829
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcc 260  Q
    ||||||||||||||||||  ||| ||||| |||   | |||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  11385946 gagggcaatggttaaggatgccataagtagcattcctacattggtttcaacaacattttgacttttaaaaagttaaatttataacttttcaccattttcc 11385847  T
Q  261 aatgctatctttctattt 278  Q
    ||| |||| |||||||||    
T  11385846 aatactatatttctattt 11385829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 52396414 - 52396529
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||||||  |||| || |||||||||||| ||||||| || ||||| ||||||||||||||||||||||||| ||||| |||||| ||    
T  52396414 agggcaatggttaaggaaattaaaaatagcatgtttgcatttgtttcaataatattttgacttttaaaaagttaaatttatcac-ttttatcatttttca 52396512  T
Q  262 atgctatctttctattt 278  Q
    || |||| |||||||||    
T  52396513 atactatatttctattt 52396529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 28851024 - 28850929
Alignment:
Q  182 caaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| ||| |||||||| ||||||||||  |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||    
T  28851024 caaaagtagcatatttgcattggtttcaacaat-ttttgacttttaaaaagttaaatttatcacttttcaccattttccaatgttatatttctattt 28850929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 45721728 - 45721839
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||||||||| |||||||| ||||||||||||  |||    |||||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  45721728 ggcaatggttaaggaaatcaaaagtagcatgtttgcattgattt---taacattttgatttttaaaaagttaaatttatcagtttttaccattttccaat 45721824  T
Q  264 gctatctttctattt 278  Q
    | ||| ||| |||||    
T  45721825 gttatatttttattt 45721839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 50295549 - 50295452
Alignment:
Q  182 caaaagtaacatgttt-gcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| ||||||| |||||  ||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||    
T  50295549 caaaagtagcatgttttgcattgatttcaacaatattttgacttttaaaaagttaaatttatcacttttcactattttccaatactatatttctattt 50295452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 32213988 - 32213908
Alignment:
Q  198 gcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| | | |||||||||    
T  32213988 gcattggtttcaacaacattttgacttttaaaaaattaaatttatcacttttcaccattttccaatgttctatttctattt 32213908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 29966800 - 29966910
Alignment:
Q  169 tggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttt-taaaaagttaaatttatcactttttaccattttccaatgcta 267  Q
    |||||||||||  |||||||| |||||||||||| |||||||||| ||||| |||||  ||||| |||||||||||| ||||| ||||||| ||||||||    
T  29966800 tggttaaggaagtcaaaagtagcatgtttgcattggtttcaacaatattttgactttaaaaaaaattaaatttatcattttttgccatttttcaatgcta 29966899  T
Q  268 tctttctattt 278  Q
    | ||| |||||    
T  29966900 tatttatattt 29966910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 40845253 - 40845338
Alignment:
Q  193 tgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||| || |||||||||| ||||| | ||||||||||||||||||||||||||| |||||||| |||| |||| |||||||||    
T  40845253 tgtttgctttggtttcaacaatattttgatttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctattt 40845338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 41898950 - 41898878
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| | || |||||||||    
T  41898950 ttcaacaatattttaacttttaaaaagttaaattcatcactttttaccatttttcaatacaatatttctattt 41898878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 17402928 - 17403015
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    |||||| ||||||||||||  |  ||| |||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  17402928 gttaagaaaaccaaaagtagtagttttacattagattcaacaatattttgacttttaaaaagttaaattcatcactttttaccatttt 17403015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 48938611 - 48938722
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||||||||||||||||  || ||| |||||  ||||||||  |||| |||||||||||| ||||||| |||||||| ||||||||| ||| |    
T  48938611 caatggttaaggaaaccaaaagtagtatatttacattaaattcaacaatgttttgacttttaaaaag-taaatttttcacttttcaccattttctaatac 48938709  T
Q  266 tatctttctattt 278  Q
     || |||||||||    
T  48938710 aatatttctattt 48938722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 51424137 - 51424244
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    ||||| |||||||||||||| |||||| |||| | ||||||||  ||||||| |||||||||||||||| |||||||||  | ||||| |||| | || |    
T  51424137 gttaaagaaaccaaaagtaatatgtttacattggattcaacaatgttttaacctttaaaaagttaaattcatcacttttagcaatttttcaatacaatat 51424236  T
Q  271 ttctattt 278  Q
    ||||||||    
T  51424237 ttctattt 51424244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 14331802 - 14331924
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| ||||||||||||||||||||||||| ||  || ||| ||||   ||||||||  |||| |||||||||||||||||||  ||| |||| |||||    
T  14331802 gccctcagggcaatggttaaggaaaccaaaaatagtatatttacattgaattcaacaatgttttgacttttaaaaagttaaattcttcatttttcaccat 14331901  T
Q  256 tttccaatgctatctttctattt 278  Q
    || ||||| | || |||||||||    
T  14331902 ttcccaatacaatgtttctattt 14331924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 44286864 - 44286930
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttt 249  Q
    |||||||||||||||||||| |||| || || ||||||| |||||||||||||||||||||| ||||    
T  44286864 aaaagtaacatgtttgcattggttttaataatattttaatttttaaaaagttaaatttatcattttt 44286930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 44359813 - 44359691
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| ||||||||||||||||||||||||| ||  || ||| ||||   ||||||||  |||| |||||||||||||||||||  |||||||| |||||    
T  44359813 gccctcagggcaatggttaaggaaaccaaaaatagtatatttacattgaattcaacaatgttttgacttttaaaaagttaaattcttcacttttcaccat 44359714  T
Q  256 tttccaatgctatctttctattt 278  Q
    || || || | || |||||||||    
T  44359713 ttcccgatacaatgtttctattt 44359691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 26469696 - 26469601
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||  |||||| |||| ||||||| || ||||| |||||||||||||||||||||||| |||| |  ||||| ||||||||| ||| |||||    
T  26469696 aaaagtagtatgttttcattggtttcaataatattttgacttttaaaaagttaaatttatcatttttcattatttttcaatgctatatttttattt 26469601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 40920165 - 40920239
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcac 245  Q
    |||||||||||||||||||     |||||||| | |||||||| ||||||||||||||||||||||||| |||||    
T  40920165 gttaaggaaaccaaaagtagtggatttgcattggattcaacaatattttaacttttaaaaagttaaattaatcac 40920239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 43168106 - 43168228
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| |||| |||||||||||||| ||||||||  || ||| ||||   ||||||||  |||| ||||||||||||||||| |  |||||||| |||||    
T  43168106 gccctcagggaaatggttaaggaaatcaaaagtagtatatttacattgaattcaacaatgttttgacttttaaaaagttaaactcttcacttttcaccat 43168205  T
Q  256 tttccaatgctatctttctattt 278  Q
    || ||||| | || |||||||||    
T  43168206 ttcccaatacaatgtttctattt 43168228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 276
Target Start/End: Original strand, 8244068 - 8244173
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||||| |||||| |||||||||| |||| ||||||| |||||      ||| ||||||||||||||||||    ||| |||||||||    
T  8244068 agggcaatggttaaggaagccaaaaataacatgtttccattggtttcaaaaacat-----gtttgaaaaagttaaatttatca----ttatcattttcca 8244158  T
Q  262 atgctatctttctat 276  Q
    ||| ||| |||||||    
T  8244159 atgttatatttctat 8244173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 30222613 - 30222678
Alignment:
Q  184 aaagtaacatgtttgcattagtttcaacaacattttaac-ttttaaaaagttaaatttatcacttt 248  Q
    |||||| ||| |||||||| |||||||||| |||||||| ||||||||| ||||||||||||||||    
T  30222613 aaagtagcatatttgcattggtttcaacaatattttaactttttaaaaaattaaatttatcacttt 30222678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 27210705 - 27210792
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacatttt-aacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||| ||| ||||||||| |  |||||||||  ||||||||| |||| |||||||||||||||||||| |||| |||| ||||||||    
T  27210705 ttaagtaaatcaaaagtaataaatttgcattaaattcaacaacttttttaacttttaaaaagttaaattgatcatttttcaccatttt 27210792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 5945450 - 5945507
Alignment:
Q  221 acttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||  || |||||||||    
T  5945450 acttttaaaaagtaaaatttatcacttttcaccatttttcaatgtcatatttctattt 5945507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 9055941 - 9055897
Alignment:
Q  168 atggttaaggaaaccaaaagtaacatgtttgcattagtttcaaca 212  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||    
T  9055941 atggttaaggaagccaaaagtagcatgtttgcattagtctcaaca 9055897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 16691309 - 16691381
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||  |||| |||||||||||||||||||  ||| |||||||||||| ||||| | || |||||||||    
T  16691309 ttcaacaatgttttgacttttaaaaagttaaattcttcattttttaccatttcccaatacaatgtttctattt 16691381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 41492924 - 41492996
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||| ||| |||||||||||||||| || ||||| ||||||||| |||| || ||||||| || |||||||||    
T  41492924 ttcatcaatattttaacttttaaaatgtaaaattcatcacttttcaccacttcccaatgcaatatttctattt 41492996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 8892901 - 8892790
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    ||||||||||||||| |||||||  || |||  |||   || |||||  |||| |||||||||||||||||||  | |||||| ||||||||||||| |     
T  8892901 aatggttaaggaaactaaaagtagtatatttatattgaatttaacaatgttttgacttttaaaaagttaaattctttacttttcaccattttccaatacg 8892802  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  8892801 atgtttctattt 8892790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 44043500 - 44043538
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttacca 254  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  44043500 ttttgacttttaaaaagttaaatatatcactttttacca 44043538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 10161069 - 10161024
Alignment:
Q  194 gtttgcattagtttcaacaacattttaacttttaaaaagttaaatt 239  Q
    ||||||||||  |||||| | |||||||||||||||||||||||||    
T  10161069 gtttgcattaaattcaacgatattttaacttttaaaaagttaaatt 10161024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 46296276 - 46296231
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcacttttta 251  Q
    |||||||| ||||| |||||||||||||||||||||| | ||||||    
T  46296276 ttcaacaatattttgacttttaaaaagttaaatttattatttttta 46296231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 23328437 - 23328493
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||||||  ||||||||||||||||||  | | ||||||||||||| |||||||||    
T  23328437 ttcaacaattttttaacttttaaaaagtctagtctatcactttttactattttccaa 23328493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 34644145 - 34644225
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcacttttta 251  Q
    |||||||||||||||| ||  | |||| ||||   |||||||| ||||||||||||||| ||| ||||| |||| ||||||    
T  34644145 gttaaggaaaccaaaactactaagtttacattgaattcaacaatattttaacttttaaatagtcaaattcatcatttttta 34644225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 157 - 278
Target Start/End: Complemental strand, 51817455 - 51817334
Alignment:
Q  157 ccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatt 256  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  51817455 ccctgagggcaatggttaaggaagccaaaagtagcatgtttgtattagtttcaacaatattttgacttttaaaaagttaaatttatcacttttcaccatt 51817356  T
Q  257 ttccaatgctatctttctattt 278  Q
    |||||||||||| ||| |||||    
T  51817355 ttccaatgctatatttttattt 51817334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 32415542 - 32415656
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| || ||||| ||||    
T  32415542 ggcaatggttaaggaaaccaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatgacttttcacaatttttcaat 32415641  T
Q  264 gctatctttctattt 278  Q
    ||||| |||||||||    
T  32415642 gctatatttctattt 32415656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 8715634 - 8715523
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    ||||||||||||| | ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  8715634 aatggttaaggaagctaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgct 8715535  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  8715534 atatttctattt 8715523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 9067521 - 9067410
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    ||||||||||||| | ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  9067521 aatggttaaggaagctaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgct 9067422  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  9067421 atatttctattt 9067410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 4759978 - 4759872
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctt 271  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||    
T  4759978 ttaaggaagccaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccatttttcaatgctatatt 4759879  T
Q  272 tctattt 278  Q
    |||||||    
T  4759878 tctattt 4759872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 8847588 - 8847474
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||||||||||||||||||| ||||||| ||||  ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8847588 ggcaatggttaaggaaaccaaaagtagcatgtttacattgttttcaacaatattttaacttttaaaaagttaaattaatcactttttaccattttccaat 8847489  T
Q  264 gctatctttctattt 278  Q
    | ||| |||||||||    
T  8847488 gttatatttctattt 8847474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 36730293 - 36730175
Alignment:
Q  160 tgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||     
T  36730293 tgagggcaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccattttt 36730194  T
Q  260 caatgctatctttctattt 278  Q
    |||| |||| ||| |||||    
T  36730193 caatactatatttatattt 36730175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 35306303 - 35306419
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    ||||||||| |||||||||||||||||| ||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  35306303 agggcaatgcttaaggaaaccaaaagtagcatgtttgcattgatttcaataacattttaacttttaaaaagttaaatttatcacttttcatcattttcca 35306402  T
Q  262 atgctatctttctattt 278  Q
    ||| ||| |||||||||    
T  35306403 atgttatatttctattt 35306419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 46317461 - 46317573
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||||     
T  46317461 caatggttaaggaagccaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcatttttcatcattttccaatgt 46317560  T
Q  266 tatctttctattt 278  Q
    ||| |||||||||    
T  46317561 tatatttctattt 46317573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 44570523 - 44570408
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  44570523 gggcaatggttaaggaagccaaaagtagcatgtttgcattgatttcaacaacattttgacttttaaaaagttaaagttatcacttttcaccattttccaa 44570424  T
Q  263 tgctatctttctattt 278  Q
    || ||| |||||||||    
T  44570423 tgttatatttctattt 44570408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 10854834 - 10854943
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||| |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  10854834 caatgattaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttaacttttaaaaagttaaatttattagttttcaccattttccaatgc 10854933  T
Q  266 tatctttcta 275  Q
    ||| ||||||    
T  10854934 tatatttcta 10854943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 25102457 - 25102344
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||| ||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  25102457 ggcaatagttaaggaaaccaaaagtagcatatttgcattggtttcaacaatattttaactttaaaaaaatt-aatttatcactttttaccattttccaat 25102359  T
Q  264 gctatctttctattt 278  Q
    ||||| |||||||||    
T  25102358 gctatatttctattt 25102344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 278
Target Start/End: Original strand, 12051004 - 12051125
Alignment:
Q  157 ccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatt 256  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||| |||| |  |||    
T  12051004 ccctcagggcaatggttaaggaagccaaaagtagcatgtttgcattgttttcaacaacattttaatttttaaaaagttaaatttatcatttttcattatt 12051103  T
Q  257 ttccaatgctatctttctattt 278  Q
    || |||| |||| |||||||||    
T  12051104 ttacaatactatatttctattt 12051125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 37509086 - 37509186
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||||||  |||||||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  37509086 caatggttaaggaagtcaaaagtaacatatttgcattggtttcaacaatattttgacttttaaaaagttaaatttatcacttttcactattttccaatgc 37509185  T
Q  266 t 266  Q
    |    
T  37509186 t 37509186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 20227514 - 20227405
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||| ||||||||  ||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| | |||||| ||||||    
T  20227514 caatgattaaggaagtcaaaagtaacatgtttgtattggtttcaataacattttaacttttaagaagttaaatttatcacttttcatcatttttcaatgc 20227415  T
Q  266 tatctttcta 275  Q
    ||| ||||||    
T  20227414 tatatttcta 20227405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 29915709 - 29915597
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||| |||||||| |||||||||  ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | |||||||||||||||||| |    
T  29915709 caatgattaaggaagccaaaagtagaatgtttgcattggtttcaaccacattttgacttttaaaaagttaaatttataattttttaccattttccaatac 29915610  T
Q  266 tatctttctattt 278  Q
    ||| ||| |||||    
T  29915609 tatatttttattt 29915597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 29964862 - 29964750
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||| |||||||| |||||||||  ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | |||||||||||||||||| |    
T  29964862 caatgattaaggaagccaaaagtagaatgtttgcattggtttcaaccacattttgacttttaaaaagttaaatttataattttttaccattttccaatac 29964763  T
Q  266 tatctttctattt 278  Q
    ||| ||| |||||    
T  29964762 tatatttttattt 29964750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 44695796 - 44695709
Alignment:
Q  175 aggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||    
T  44695796 aggaagccaaaagtaacatgtttgcattgatttcaacaacattttaatttttaaaaagttaaatttatcatttttcaccattttccaa 44695709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 52570755 - 52570869
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacat--gtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||||||  ||||||||| |||  ||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||    
T  52570755 caatggttaaggatgccaaaagtagcatatgtttgcattggtttcaacaatattttgacttttaaaaagttatatttatcacttttcaccattttccaat 52570854  T
Q  264 gctatctttctattt 278  Q
     |||| |||||||||    
T  52570855 actatatttctattt 52570869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 12905415 - 12905305
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    |||| |||||||| | ||||||| |||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||| |||||||| ||||| |    
T  12905415 aatgattaaggaagcaaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaatgttaaatttatcatttttcaccatttt-caatgtt 12905317  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  12905316 atatttctattt 12905305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 31647278 - 31647362
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttt 249  Q
    ||||||||||||||| ||||||||| ||||||||||||  |||||| |||||||| |||||||||||||||||||||||| ||||    
T  31647278 gcaatggttaaggaagccaaaagtagcatgtttgcattgatttcaataacattttgacttttaaaaagttaaatttatcattttt 31647362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 21324496 - 21324602
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    ||||| ||||| |||||||| ||| ||||||  | |||||||| |||||||||||||||||||||||| |||||||||| | || |||||||||| || |    
T  21324496 gttaaagaaactaaaagtaatatgattgcatcggattcaacaatattttaacttttaaaaagttaaatctatcacttttcatca-tttccaatgcaatat 21324594  T
Q  271 ttctattt 278  Q
    ||||||||    
T  21324595 ttctattt 21324602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 34060895 - 34060803
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||  |||||||   ||||||||||   |||||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  34060895 gttaaggaaattaaaagtagtttgtttgcattgaattcaacaatattttaacttttaaaaagttaaattcatcacttttcaccatttttcaat 34060803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 41345977 - 41346047
Alignment:
Q  193 tgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||| |||||||||| ||||||||||||||||| |||||||||| |||||| || ||||| ||||    
T  41345977 tgtttgcattggtttcaacaatattttaacttttaaaaaattaaatttattacttttcactatttttcaat 41346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 18881 - 18809
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||| ||| ||| ||||||| || |||||||||    
T  18881 ttcaacaatattttaatttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttctattt 18809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 19022 - 18950
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||| ||| ||| ||||||| || |||||||||    
T  19022 ttcaacaatattttaatttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttctattt 18950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 45899672 - 45899580
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcacttttt-accattttccaat 263  Q
    ||||||||||||||||||  |||||| ||||   |||||||| ||||| ||||||||||| ||||||| |||||||||| | |||||||||||    
T  45899672 ttaaggaaaccaaaagtagtatgtttacattgaattcaacaatattttgacttttaaaaatttaaattcatcactttttcatcattttccaat 45899580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 11316970 - 11317037
Alignment:
Q  195 tttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||| || |||||| ||||||||||||    
T  11316970 tttgcattagattcaataatattttgacttttaaaaagttaaattcataacttttcaccattttccaa 11317037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 26850579 - 26850535
Alignment:
Q  215 attttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||    
T  26850579 attttaacttttaaaaaattaaattcatcactttttaccattttc 26850535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 34750351 - 34750293
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatg 264  Q
    |||||||| ||||||| || |||||||||||||| ||||||||| |||| |||||||||    
T  34750351 ttcaacaatattttaatttataaaaagttaaattcatcacttttcaccagtttccaatg 34750293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 50420699 - 50420744
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcacttttta 251  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||    
T  50420699 ttcaacaattttttaacttttaaaaagttaaatctatcacttttta 50420744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 11675293 - 11675398
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    ||||||||||||||||||   | ||| ||||| | |||||||| ||||| || ||||||||||||||||  |||  |||||||||||| |||| | || |    
T  11675293 gttaaggaaaccaaaagtggtaggttagcattggattcaacaatattttgacatttaaaaagttaaattcgtca--ttttaccatttttcaatacaatat 11675390  T
Q  271 ttctattt 278  Q
    ||||||||    
T  11675391 ttctattt 11675398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 39974900 - 39974828
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||  ||||||||||||||||||||||||| ||||||| | | ||||||| ||||| || ||| |||||    
T  39974900 ttcaacactattttaacttttaaaaagttaaattcatcacttctcatcattttctaatgcaatatttttattt 39974828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 46160500 - 46160575
Alignment:
Q  179 aaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttacca 254  Q
    |||||||||||  ||||| ||||||| ||||||||  ||||||| ||| |||||||| ||| ||||||||| ||||    
T  46160500 aaccaaaagtagtatgttcgcattagattcaacaattttttaaccttttaaaagttacattcatcacttttcacca 46160575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 49976232 - 49976185
Alignment:
Q  209 aacaacattttaacttttaaaaagttaaatttatcactttttaccatt 256  Q
    ||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  49976232 aacaatattttgacttttaaaaagttaaattcatcacttttcaccatt 49976185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 271288 - 271202
Alignment:
Q  178 aaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatg 264  Q
    ||||||||||||  | ||||| ||| | ||||||||  |||||||||||||||||| ||||| || | |||||| | ||||||||||    
T  271288 aaaccaaaagtagaaagtttgtattggattcaacaatgttttaacttttaaaaagtcaaattcattattttttatcgttttccaatg 271202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 6822879 - 6822837
Alignment:
Q  220 aacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||||||||||||| |||| |||||||||||||| |||||||    
T  6822879 aacttttaaaaagttgaattcatcactttttaccactttccaa 6822837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 12060153 - 12060096
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||  |||||||||||||||| | |||| |||||||||| | |||||||||||    
T  12060153 ttcaacaattttttaacttttaaaaactcaaatctatcacttttcatcattttccaat 12060096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 1803919 - 1803975
Alignment:
Q  222 cttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||| |||||||||||||||| |||||||| |||| ||||  ||| |||||||||    
T  1803919 cttttacaaagttaaatttatcattttttaccctttttcaataatatatttctattt 1803975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 48)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 34546743 - 34546865
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  34546743 gccctaagggcaatggttaaggaagccaaaagtatcatttttgcattagtttcaacaacattttaacttttaaaaaattaaatttatcacttttcaccat 34546842  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||| ||||| ||| |||||||||    
T  34546843 ttttcaatgttatatttctattt 34546865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 35653399 - 35653277
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||||| |||||    
T  35653399 gccctcagggcaatggttaaggaagccaaaagtaccatgtttgcattggtttcaacaacattttgattttcaaaaagttaaatttatcacttttcaccat 35653300  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||||||||||||| |||||||||    
T  35653299 tttccaatgctatatttctattt 35653277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 4422105 - 4421986
Alignment:
Q  159 ctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    |||||||||||||||||||||  |||||||||||||||||||||   |||||||||||||| | || |||||||||||||||||||||||| ||||||||    
T  4422105 ctgagggcaatggttaaggaagtcaaaagtaacatgtttgcattgacttcaacaacattttgatttgtaaaaagttaaatttatcacttttcaccatttt 4422006  T
Q  259 ccaatgctatctttctattt 278  Q
    |||||||||| |||||||||    
T  4422005 ccaatgctatatttctattt 4421986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 13951373 - 13951258
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||||||  |||||||||||||||| |||||||| |||    
T  13951373 gggcaatggttaaggaagccaaaagtagcatgcttgcattggtttcaacaacattttgacttttaaaaaaataaatttatcacttttcaccatttttcaa 13951274  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  13951273 tgctatatttctattt 13951258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 16315676 - 16315556
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| |||||||||||||||||| ||||||||| | |||||||||| |||||||||||||||| ||| ||||||||||  ||||||||||||| |||||    
T  16315676 gccctcagggcaatggttaaggaagccaaaagtagcgtgtttgcattggtttcaacaacattttgactattaaaaagtt--atttatcacttttcaccat 16315579  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||||||||||||| |||||||||    
T  16315578 tttccaatgctatatttctattt 16315556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 12914140 - 12914261
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    |||||||||| ||||||||||||| |||||||||  ||||||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||| |||||    
T  12914140 gccctgagggtaatggttaaggaagccaaaagtagtatgtttgcattggtttcaacaatattttgatttttaaaaaattaaatttatcacttttcaccat 12914239  T
Q  256 tttccaatgctatctttctatt 277  Q
    ||| ||||||||| ||||||||    
T  12914240 ttttcaatgctatatttctatt 12914261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 5151468 - 5151576
Alignment:
Q  170 ggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatc 269  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||| |||     
T  5151468 ggttaaggaaggcaaaagtagcatgtttgcattagtttcaacaacattttgacttttaaaaagttaaatttatcatttttcatcattttccaatgttata 5151567  T
Q  270 tttctattt 278  Q
    |||||||||    
T  5151568 tttctattt 5151576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 35945222 - 35945333
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    |||||||||| || |||||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |    
T  35945222 aatggttaagaaagccaaaaatatcatatttgcattagtttcaacaacattttaacatttaaaaagttaaatttatcacttttcactattttccaatgtt 35945321  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  35945322 atatttctattt 35945333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 4962655 - 4962538
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcc 260  Q
    |||||||||||||| | ||  |||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||    
T  4962655 gagggcaatggttaggaaagacaaaagtagcatgtttgtattagtttcaacaacattttgactttaaaaaagttaaatttatcacttttcatcattttcc 4962556  T
Q  261 aatgctatctttctattt 278  Q
    |||| ||| |||||||||    
T  4962555 aatgttatatttctattt 4962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 43414182 - 43414086
Alignment:
Q  182 caaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||    
T  43414182 caaaagtaacatgtttgcattggtttcaacaacattttgatttttaaaaagttaaattgatcatttttcaccattttccaatgctatatttctattt 43414086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 25568428 - 25568314
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||| | |||||||||||||||| |||||||||| | |||||| ||||    
T  25568428 ggcaatggttaaggaaactaaaattaacatgtttgcattggtttcaataacattttgatttttaaaaagttaaatgtatcacttttcatcatttttcaat 25568329  T
Q  264 gctatctttctattt 278  Q
    ||||| ||| |||||    
T  25568328 gctatatttatattt 25568314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 25017426 - 25017313
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatg 264  Q
    |||||||||||||||  |||||||| |||||||| ||| |||||||| | ||||| ||||||||||||||||||||||||||||| || ||||||||||     
T  25017426 gcaatggttaaggaagtcaaaagtagcatgtttgtattggtttcaacgatattttgacttttaaaaagttaaatttatcacttttcacaattttccaata 25017327  T
Q  265 ctatctttctattt 278  Q
    |||| |||||||||    
T  25017326 ctatatttctattt 25017313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 39692984 - 39693087
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatg 264  Q
    |||||||||||||||  ||||||||||||||||| |||  ||||||||| |||||||||||||||||| ||||||||||| ||||||||| ||| |||||    
T  39692984 gcaatggttaaggaagtcaaaagtaacatgtttgtattgatttcaacaatattttaacttttaaaaagataaatttatcattttttaccacttttcaatg 39693083  T
Q  265 ctat 268  Q
    ||||    
T  39693084 ctat 39693087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 39567868 - 39567990
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| ||||||||| ||||||||  |||||||| |||||||||||| ||||||||||  |||| | |||||||||||||||||||||| |||| | |||    
T  39567868 gccctcagggcaatgattaaggaagtcaaaagtagcatgtttgcattggtttcaacaatgttttgatttttaaaaagttaaatttatcatttttcatcat 39567967  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||||||||||||| ||| |||||    
T  39567968 tttccaatgctatatttatattt 39567990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 28143253 - 28143145
Alignment:
Q  170 ggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatc 269  Q
    |||||| ||| ||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||||||| | |||| ||||||| |||||| |||     
T  28143253 ggttaaagaagccaaaagtagcatgtttgtattagtttcaacaacattttgatttttaaaaagttaaatttattatttttcaccatttcccaatgttata 28143154  T
Q  270 tttctattt 278  Q
    |||||||||    
T  28143153 tttctattt 28143145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 3639207 - 3639097
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    |||||||||||||  ||||||||| ||||||||||| |||||||||| |||| | |||||||||| |||||||||||||| || |||||||||||||| |    
T  3639207 aatggttaaggaagtcaaaagtaatatgtttgcattggtttcaacaatatttga-cttttaaaaaattaaatttatcactcttcaccattttccaatgtt 3639109  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  3639108 atatttctattt 3639097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 8410115 - 8410229
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||| |||||||| |||||| || |||||||| ||| |||| || |||||||| |||||||||||||||||||||||| |||||||||||||| |||    
T  8410115 ggcaatgattaaggaagccaaaactagcatgtttgtattggttttaataacattttgacttttaaaaagttaaatttatcattttttaccattttctaat 8410214  T
Q  264 gctatctttctattt 278  Q
     |||| ||| |||||    
T  8410215 actatatttttattt 8410229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 12068307 - 12068196
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||| ||  ||||| || |||||||| ||| || |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |    
T  12068307 caatggttaagaaagtcaaaa-tagcatgtttgtattggtgtcaataacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatac 12068209  T
Q  266 tatctttctattt 278  Q
    ||| |||||||||    
T  12068208 tatatttctattt 12068196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 27823233 - 27823346
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    ||||||||| ||||||||  ||||| || |||||||| |||  |||||||   ||||||| ||||||||||||||||||||||||||| |||||||||||    
T  27823233 agggcaatgattaaggaagtcaaaattagcatgtttgtattgatttcaac---attttaatttttaaaaagttaaatttatcacttttcaccattttcca 27823329  T
Q  262 atgctatctttctattt 278  Q
    || |||| |||||||||    
T  27823330 atactatatttctattt 27823346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 338881 - 338801
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||| |||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||| ||||    
T  338881 aaaagtagcatgtttgcatttgtttcaacaatattttgatttttaaaaagttaaatttatcactttttatcatttttcaat 338801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 1759821 - 1759904
Alignment:
Q  195 tttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||  ||||||| |||| |||| |||||||||    
T  1759821 tttgcattggttttaacaacattttgacttttaaaaagttaaatttatcacttttctccatttttcaatactatatttctattt 1759904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 37243852 - 37243919
Alignment:
Q  196 ttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  37243852 ttgcattgatttcaacaacattttaatttttaaaaagttaaatttatcacttttcaccattttccaat 37243919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 278
Target Start/End: Original strand, 39167538 - 39167682
Alignment:
Q  134 gtcttgctaaccattgtcctca-gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaag 232  Q
    |||||||||||||||| ||| | ||||| ||||||||||||||| ||||||||||||| || ||| ||||   || |||||  |||| | ||||||||||    
T  39167538 gtcttgctaaccattgccctgatgcccttagggcaatggttaagaaaaccaaaagtaatatatttacattgaatttaacaatgttttgatttttaaaaag 39167637  T
Q  233 ttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| | |||||| ||||||||||||| | || |||||||||    
T  39167638 ttaaattt-ttacttttcaccattttccaatacaatgtttctattt 39167682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 4838259 - 4838322
Alignment:
Q  169 tggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaag 232  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  4838259 tggttaaggaagccaaaaataacatgtttgcattagtttcaacaatattttgacttttaaaaag 4838322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 20184677 - 20184570
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    |||||||||| ||||||||| ||| ||| ||||| ||||||||  |||||||||||||||||| ||||| ||||||||| ||| |||  |||||| || |    
T  20184677 gttaaggaaatcaaaagtaatatgattgtattagattcaacaatgttttaacttttaaaaagtgaaattcatcacttttcaccgtttctcaatgcaatat 20184578  T
Q  271 ttctattt 278  Q
    ||||||||    
T  20184577 ttctattt 20184570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 1479232 - 1479158
Alignment:
Q  204 gtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| |  ||||| ||||||||| |||||||||    
T  1479232 gtttcaataacattttgacttttaaaaagttaaatttatcacttttcattatttttcaatgctatatttctattt 1479158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 39335454 - 39335540
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    |||| |||||||||| ||  ||||||| ||| | |||||||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  39335454 ttaaagaaaccaaaattattatgtttgtattggattcaacaacattttgacttttaaaaagttaaattcatcactttttactatttt 39335540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 10406772 - 10406873
Alignment:
Q  175 aggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttct 274  Q
    ||||||||||||||||||| |||||||| | |||||||| ||||| |  |||||||| |||||||||||||||||  ||||||| |||| | || |||||    
T  10406772 aggaaaccaaaagtaacatttttgcattggattcaacaatattttga-atttaaaaaattaaatttatcacttttctccatttttcaatacaatatttct 10406870  T
Q  275 att 277  Q
    |||    
T  10406871 att 10406873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 678430 - 678522
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||||||||| || || |||| || | | ||||||||  ||||||||||||||| |||||||| || |||||| |||||||||||||    
T  678430 gttaaggaaaccaaaattagcaggtttacaatggattcaacaattttttaacttttaaaaggttaaattcattacttttcaccattttccaat 678522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 15915871 - 15915919
Alignment:
Q  230 aagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  15915871 aagttaaatttatcacttttcaccattttccaatgctatatttctattt 15915919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 10017727 - 10017644
Alignment:
Q  192 atgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||| |||| ||||||||||||||||||||||||||  |||||||| |||| |||| |||||| | |||| |||||||||    
T  10017727 atgtttgcattggttttaacaacattttaacttttaaaaagtt--atttatcaattttcacca-tttccagtactatatttctattt 10017644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 19894798 - 19894905
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    |||||||||| ||||||||  | ||||| ||| | || ||||| ||||||||||||||||||||||||| ||||  ||| ||||||||  ||||| || |    
T  19894798 gttaaggaaatcaaaagtataaggtttgaattggatttaacaatattttaacttttaaaaagttaaattcatcatatttaaccattttttaatgcaatat 19894897  T
Q  271 ttctattt 278  Q
    ||||||||    
T  19894898 ttctattt 19894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 15915014 - 15915083
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaat 238  Q
    |||||||||||||||||||||||  |||||||  ||  |||||| || ||||||||||||||||||||||||    
T  15915014 aatggttaaggaaaccaaaagtagtatgtttg--ttgatttcaaaaatattttaacttttaaaaagttaaat 15915083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 38610386 - 38610314
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||  |||| |||||||||||||||||||  |||||||||| |||||| |||||| || |||||||||    
T  38610386 ttcaacaatgttttgacttttaaaaagttaaattcttcactttttatcatttttcaatgcaatgtttctattt 38610314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 39042170 - 39042096
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatt 239  Q
    ||||||||||| ||| |||||| || ||||||| ||||    ||||||||||||||||||||||||| |||||||    
T  39042170 gcaatggttaaagaagccaaaaatagcatgtttacattgacatcaacaacattttaacttttaaaaaattaaatt 39042096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 6823858 - 6823774
Alignment:
Q  195 tttgcattagtttcaacaacattttaacttttaaaaagtt-aaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| | |||||||| |||||||||||||||||||| |||||||| |||||  ||| |||||| || | || |||||||||    
T  6823858 tttgcattggattcaacaatattttaacttttaaaaagttaaaatttattactttccaccgttttccgatacaatatttctattt 6823774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 40099352 - 40099420
Alignment:
Q  211 caacattttaacttttaaaaagttaaatttatcactttttacca-ttttccaatgctatctttctattt 278  Q
    |||||||| || |||||||| |||||||||||||||||| |||| |||| ||||||||| ||| |||||    
T  40099352 caacatttcaatttttaaaaggttaaatttatcacttttcaccattttttcaatgctatatttttattt 40099420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 12349628 - 12349585
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    |||||||||||||||||| |||| |||||||||| |||||||||    
T  12349628 ttttaacttttaaaaagtcaaatctatcacttttcaccattttc 12349585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 24288502 - 24288553
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattt 257  Q
    ||||||||  || |||||||||||||||||||| |||||||||| |||||||    
T  24288502 ttcaacaattttgtaacttttaaaaagttaaatctatcacttttcaccattt 24288553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 24373719 - 24373668
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattt 257  Q
    ||||||||  || |||||||||||||||||||| |||||||||| |||||||    
T  24373719 ttcaacaattttgtaacttttaaaaagttaaatctatcacttttcaccattt 24373668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 28599738 - 28599691
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||||||||||| |||||||||| |||| || ||||||||||    
T  28599738 ttttaacttttaaaaagtcaaatttatcatttttcactattttccaat 28599691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 3015144 - 3015106
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatca 244  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  3015144 ttcaacaatattttaacttttaaaaagttaaattaatca 3015106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 16899680 - 16899635
Alignment:
Q  192 atgtttgcattagtttcaacaacattttaacttttaaaaagttaaa 237  Q
    ||||||| ||| | |||||||||||||| |||||||||||||||||    
T  16899680 atgtttgtattggattcaacaacattttgacttttaaaaagttaaa 16899635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 27535114 - 27535167
Alignment:
Q  211 caacattttaacttttaaaaagtt-aaatttatcactttttaccattttccaat 263  Q
    ||||||||||||||||||||| || ||||| ||||||||| |||||||| ||||    
T  27535114 caacattttaacttttaaaaacttaaaattcatcacttttcaccatttttcaat 27535167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 3242047 - 3241975
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| |||||||||||||||||||| |||| |||| |||| || | || ||||||| || ||| |||||    
T  3242047 ttcaacaatattttaacttttaaaaagtttaattcatcaattttcactacttcccaatgcaatatttttattt 3241975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 5058772 - 5058812
Alignment:
Q  218 ttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    |||| ||||||||||||||||||||||||||| || |||||    
T  5058772 ttaatttttaaaaagttaaatttatcacttttcacaatttt 5058812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 17168691 - 17168763
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||| ||| ||||||| ||||||||||| ||||| |||| |||| ||| |||| |||||| || |||||||||    
T  17168691 ttcagcaatattttaaattttaaaaagtcaaattcatcatttttcaccgtttttcaatgcaatatttctattt 17168763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 28996229 - 28996285
Alignment:
Q  207 tcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||  ||||||||||||||||||| |||| |  |||||| |||||||||||||    
T  28996229 tcaacaattttttaacttttaaaaagttgaattcacaacttttcaccattttccaat 28996285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 55)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 24359839 - 24359730
Alignment:
Q  169 tggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctat 268  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  24359839 tggttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttaacttttaaaaagttaaatttatccctttttaccattttccattgctat 24359740  T
Q  269 ctttctattt 278  Q
     |||||||||    
T  24359739 atttctattt 24359730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 29034658 - 29034774
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  29034658 agggcaatggttaagaaagccaaaagtagcatgtttgcattagtttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccattttcca 29034757  T
Q  262 atgctatctttctattt 278  Q
    || |||| ||| |||||    
T  29034758 atactatatttatattt 29034774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 42222190 - 42222308
Alignment:
Q  160 tgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  42222190 tgagggcaatggttaaggaaactaaaagtaacatgtttgtattggtttcaacaatattttgacttttaaaaagttaaatttatcacttttcaccattttc 42222289  T
Q  260 caatgctatctttctattt 278  Q
    |||| | || |||||||||    
T  42222290 caataccatatttctattt 42222308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 8380411 - 8380528
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcc 260  Q
    ||||||||||||||||||| |||||||||  |||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  8380411 gagggcaatggttaaggaagccaaaagtagtatgttttcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttttcatcattttcc 8380510  T
Q  261 aatgctatctttctattt 278  Q
    |||||||| ||| |||||    
T  8380511 aatgctatatttttattt 8380528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 278
Target Start/End: Complemental strand, 27053662 - 27053515
Alignment:
Q  132 gggtcttgctaaccattgtcctcagccctgagggcaa--tggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaa 229  Q
    |||||||||||||||||| ||||||   | |||||||  |||||||||||||||||||||  ||||||||||| |||||||||| ||||| |||||||||    
T  27053662 gggtcttgctaaccattgccctcag-ggtaagggcaatgtggttaaggaaaccaaaagtagaatgtttgcattggtttcaacaatattttgacttttaaa 27053564  T
Q  230 aagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||||| |||||||||  ||||||| |||||||||    
T  27053563 aagttaaatttatcacttttcaccattttctgatgctatatttctattt 27053515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 5240466 - 5240354
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||| |    
T  5240466 caatggttaaggaagccaaaagtagcatgtttgcattggtttcaataacattttgacttttaaaaagttaaatttatcacttttcaccatttttcaatac 5240367  T
Q  266 tatctttctattt 278  Q
    ||| |||||||||    
T  5240366 tatatttctattt 5240354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 1910215 - 1910331
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||| |||  |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |    
T  1910215 agggcaatggttaaagaagtcaaaagtagcatgtttacatttgtttcaacaacattttaacttttaaaaagttaaatttatcatttttcaccattttcta 1910314  T
Q  262 atgctatctttctattt 278  Q
    ||| ||| |||||||||    
T  1910315 atgttatatttctattt 1910331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 8292714 - 8292832
Alignment:
Q  160 tgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    ||||||||||||||||||||  |||||||| |||||||| |||  ||||||||||||||| ||||||||||||  |||||||| |||||| |||||||||    
T  8292714 tgagggcaatggttaaggaagtcaaaagtagcatgtttggattgatttcaacaacattttgacttttaaaaaggcaaatttataacttttcaccattttc 8292813  T
Q  260 caatgctatctttctattt 278  Q
    ||||||||| |||||||||    
T  8292814 caatgctatatttctattt 8292832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 29687457 - 29687547
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  29687457 ttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttaacttttaaaaagttaaattcatcacttttcaccattttccaa 29687547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 46478694 - 46478578
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcc 260  Q
    |||| |||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||| |    
T  46478694 gaggacaatggttaacgaagccaaaagtaacatatttgcattagtttcaacaatattttaacttttaaaaagttaaatttatca-ttttcactatttttc 46478596  T
Q  261 aatgctatctttctattt 278  Q
    |||| ||| |||||||||    
T  46478595 aatgatatatttctattt 46478578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 278
Target Start/End: Complemental strand, 7323095 - 7322975
Alignment:
Q  158 cctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattt 257  Q
    |||||| ||||||||||| |||  |||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  7323095 cctgagagcaatggttaaagaagtcaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaaattaaatttatcacttttcaccattt 7322996  T
Q  258 tccaatgctatctttctattt 278  Q
    | ||| | ||| |||||||||    
T  7322995 ttcaaggttatatttctattt 7322975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 40763241 - 40763336
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||    
T  40763241 aaaagtagcatatttgcattggtttcaacaacattttaacttttaaaaagttaaatttatcacttttcaccatttttcaatgttatatttctattt 40763336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 43567623 - 43567528
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||||||    
T  43567623 aaaagtatcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatactataattctattt 43567528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 49069531 - 49069642
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| || || | ||||||||||||| ||||||||||||| |||||||| |||| ||    
T  49069531 aatggttaaggaaaccaaaagtaacatgtttgtattggtttcaacaatatattgatttttaaaaagttagatttatcacttttcaccatttttcaatact 49069630  T
Q  267 atctttctattt 278  Q
    || |||||||||    
T  49069631 atatttctattt 49069642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 41188926 - 41188808
Alignment:
Q  160 tgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    ||||| |||||||||||||| ||||| |||  |||||||||||  |||||||| |||||| ||||||||||||||||||||||||| ||| |||||||||    
T  41188926 tgaggacaatggttaaggaagccaaatgtagtatgtttgcattgatttcaacagcattttgacttttaaaaagttaaatttatcacctttcaccattttc 41188827  T
Q  260 caatgctatctttctattt 278  Q
    ||||||||| ||| |||||    
T  41188826 caatgctatatttatattt 41188808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 22521561 - 22521670
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||| ||  |||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| | | |||||||||||||    
T  22521561 caatggttaagaaagtcaaaagtagcatgtttgcattggtttcaacaacattttgacttttaagaagttaaatttatcacttctcatcattttccaatgc 22521660  T
Q  266 tatctttcta 275  Q
    ||| ||||||    
T  22521661 tatatttcta 22521670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 36279094 - 36279206
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||||||||| ||  |||||||| ||||||||||||| ||||||||   |||| | ||||||||||||||||||||||||||| ||||||||||||    
T  36279094 gggcaatggttaagaaaggcaaaagtagcatgtttgcattaatttcaaca---ttttgatttttaaaaagttaaatttatcacttttcaccattttccaa 36279190  T
Q  263 tgctatctttctattt 278  Q
    |||||| ||| |||||    
T  36279191 tgctatatttatattt 36279206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 3681699 - 3681767
Alignment:
Q  196 ttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatg 264  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3681699 ttgcattggtttcaacaacattttaacttttaaaaagttaaatttatcacttttcaccattttccaatg 3681767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 5348097 - 5347994
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctt 271  Q
    |||||||| ||||||||| |||||||||||| |||||||||   |||| ||||||||||||||||||||||||||||| | |||||||||||| ||| ||    
T  5348097 ttaaggaagccaaaagtagcatgtttgcattggtttcaaca---ttttgacttttaaaaagttaaatttatcacttttcatcattttccaatgttatatt 5348001  T
Q  272 tctattt 278  Q
    |||||||    
T  5348000 tctattt 5347994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 22707049 - 22707136
Alignment:
Q  191 catgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||| ||||||||||||| |||||||||||||||| |||||||||| |||| |  ||||||||||||||| |||||||||    
T  22707049 catgtttgcattggtttcaacaacatgttaacttttaaaaagtaaaatttatcatttttcattattttccaatgctatatttctattt 22707136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 40194818 - 40194884
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttt 249  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  40194818 aaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaaattaaatttatcactttt 40194884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 43958200 - 43958105
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||||| ||||||  || ||||| ||||||||||| |||||||||||| |||| || |||||| ||| |||| |||||||||    
T  43958200 aaaagtaacatgtttgcattggtttcagtaatattttgacttttaaaaaattaaatttatcatttttcacaattttctaatactatatttctattt 43958105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 46042749 - 46042834
Alignment:
Q  192 atgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||| |||||||||||||||  ||||| |||||||||||||||| |||||| |||||||| |||| |||| |||||||||    
T  46042749 atgtttgcattggtttcaacaacatttagactttaaaaaagttaaatttataacttttcaccatttt-caatactatatttctattt 46042834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 8258756 - 8258675
Alignment:
Q  182 caaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||  ||||||||||| |||||||||| ||| | ||| ||||||||||||||||||||||||| |||||||| ||||    
T  8258756 caaaagtagtatgtttgcattggtttcaacaaaattatgactattaaaaagttaaatttatcacttttcaccatttttcaat 8258675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 44297030 - 44296945
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatt 256  Q
    ||||||||||||||||||| || |||| |||| | |||||| | ||||||||||||||||| ||||||| ||||||||| ||||||    
T  44297030 gttaaggaaaccaaaagtagcaggtttacattggattcaacgatattttaacttttaaaaacttaaattcatcacttttcaccatt 44296945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 31626147 - 31626083
Alignment:
Q  194 gtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||| | ||||||    
T  31626147 gtttgcattggtttcaacaacattttgatttttaaaaagttaaatttatcacttttcatcatttt 31626083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 30538596 - 30538502
Alignment:
Q  181 ccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||||||  ||||||||   |||| | |||||||||||||||||||||| |||| || |||||| ||| |||| |||||||||    
T  30538596 ccaaaagtaacatgtttgcattgatttcaaca---ttttgatttttaaaaagttaaatttatcatttttcactattttctaatactatatttctattt 30538502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 48454907 - 48454844
Alignment:
Q  215 attttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||    
T  48454907 attttgacttttaaaaagttaaatttatcacttttcaccatttcccaatgttatatttctattt 48454844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 18529282 - 18529196
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattt 257  Q
    |||||| ||||||||| || |||||||||| ||| |||||||||||||| ||||  ||||| ||||||| ||||||||| |||||||    
T  18529282 gttaagcaaaccaaaattagcatgtttgcaatagattcaacaacattttgacttgaaaaaaattaaattcatcacttttcaccattt 18529196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 16082570 - 16082473
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    |||||| | ||||||||| |||||||||  ||||||||||| | |||||||| |  ||||||||||||| |||||||| |||| |||| |||||||||    
T  16082570 agggcacttgttaaggaatccaaaagtagtatgtttgcattggattcaacaataacttaacttttaaaacgttaaattcatcaattttcaccattttc 16082473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 35404399 - 35404310
Alignment:
Q  155 agccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatca 244  Q
    |||||| |||||| | |||||||||| ||||||||  | |||| |||||| |||||| | ||||||||||||||||||||||||| ||||    
T  35404399 agccctaagggcagttgttaaggaaatcaaaagtagtaggtttacattagattcaacgatattttaacttttaaaaagttaaattcatca 35404310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 48879645 - 48879742
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||| ||| |||||||| ||| ||| |||||  |||||||| ||||||||||||||||| |||||||  |||||||| || |||| |||||    
T  48879645 caatggttaagaaaatcaaaagtagcatatttacattaaattcaacaatattttaacttttaaaaaattaaattcttcacttttcactatttcccaat 48879742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 29959035 - 29959095
Alignment:
Q  159 ctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacatttt 219  Q
    |||||| ||||| ||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  29959035 ctgaggacaatgattaaggaaaccaaaagtattatgtttgcattggtttcaacaacatttt 29959095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 32204197 - 32204269
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||| || ||||||||||||||||||||||||| ||||||||| | |||||| |||||| || |||||||||    
T  32204197 ttcaaaaatattttaacttttaaaaagttaaattcatcacttttcatcatttttcaatgcaatatttctattt 32204269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 16957639 - 16957711
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaa 237  Q
    |||||||||||||||| |||||||||| || ||| |||||  |||||||| ||||| |||||||||||||||||    
T  16957639 ggcaatggttaaggaa-ccaaaagtaatatatttacattaaattcaacaatattttgacttttaaaaagttaaa 16957711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 16931867 - 16931962
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||| ||||||||| ||  || ||| |||||  |||||||| ||||| |||||||||||||||||||  |||| |||||| ||||||||||    
T  16931867 aatggttaagaaaaccaaaaatagtatatttacattaaattcaacaatattttgacttttaaaaagttaaattattcac-ttttactattttccaat 16931962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 16937250 - 16937345
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||| ||||||||| ||  || ||| |||||  |||||||| ||||| |||||||||||||||||||  |||| |||||| ||||||||||    
T  16937250 aatggttaagaaaaccaaaaatagtatatttacattaaattcaacaatattttgacttttaaaaagttaaattattcac-ttttactattttccaat 16937345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 30388793 - 30388697
Alignment:
Q  167 aatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||| |||  ||||||||  ||||||  |||  |||||| || ||||| |||||||||||||||||||||||| |||| |||||||| ||||    
T  30388793 aatggttaaagaagtcaaaagtagtatgtttatattgatttcaataatattttgacttttaaaaagttaaatttatcatttttcaccatttttcaat 30388697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 40067045 - 40066939
Alignment:
Q  170 ggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatc 269  Q
    ||||||||||  ||||||||  || |||| ||| |||| ||||||||||||  |||||||||||||||||||||| |||| |||||||| ||||  |||     
T  40067045 ggttaaggaaggcaaaagtagtat-tttgtattggttttaacaacattttat-ttttaaaaagttaaatttatcatttttcaccatttttcaatattata 40066948  T
Q  270 tttctattt 278  Q
    |||||||||    
T  40066947 tttctattt 40066939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 40774336 - 40774264
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||| ||| ||||||||||||||||||||||||| |||| |||| | |||||| |||||| || |||||||||    
T  40774336 ttcatcaatattttaacttttaaaaagttaaattcatcaattttcatcatttttcaatgcaatatttctattt 40774264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 4686127 - 4686080
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  4686127 ttttaacttttaaaaagttaaattaatcacttttcaccatttttcaat 4686080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 35239915 - 35239829
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||| ||| |||||||| |||||| ||||   ||||| | |||||||||||||||||||||||||| ||||| ||||| ||||||    
T  35239915 gttaaggtaacaaaaagtaatatgttt-cattgaattcaatagcattttaacttttaaaaagttaaattcatcacgttttatcatttt 35239829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 6548533 - 6548603
Alignment:
Q  194 gtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatg 264  Q
    ||||||||| | | |||||| ||||||||||||||||||||||||| |||| |||| ||| ||| ||||||    
T  6548533 gtttgcattggatccaacaatattttaacttttaaaaagttaaattcatcatttttcaccgtttcccaatg 6548603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 10575896 - 10575802
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattt 257  Q
    ||||||||||||| |||| ||||||||  || ||| ||||   |||||||| ||||  | |||||||||||||||||| |||||||| |||||||    
T  10575896 gggcaatggttaaagaaatcaaaagtagtatattttcattgaattcaacaatatttggagttttaaaaagttaaatttttcacttttcaccattt 10575802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 31360363 - 31360314
Alignment:
Q  229 aaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||||||||||||| ||||| | || |||||||||    
T  31360363 aaagttaaatttatcactttttaccatttcccaatacaatatttctattt 31360314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 44260631 - 44260558
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatca 244  Q
    |||||||||||||||| ||  ||||||||||||  ||||| ||||||||  |||||||||| ||||||| ||||    
T  44260631 gttaaggaaaccaaaattagtatgtttgcattaaattcaataacattttggcttttaaaaaattaaattcatca 44260558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 5543061 - 5543112
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattt 257  Q
    ||||||||  |||||||||||||||||| |||| |||||||||| |||||||    
T  5543061 ttcaacaattttttaacttttaaaaagtcaaatatatcacttttcaccattt 5543112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 35003630 - 35003673
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||    
T  35003630 ttttaatttttaaaaagttaaattaatcacttttcaccattttc 35003673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 43189731 - 43189688
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttt 249  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||    
T  43189731 ttcaacaatattttaacttttaaaaagtcaaattcatcactttt 43189688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 44391019 - 44391082
Alignment:
Q  215 attttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||| ||||| || | ||||||| |||||| ||||| || |||||||||    
T  44391019 attttaacttttaaaaagtcaaattcataattttttacaattttctaatgcaatatttctattt 44391082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 3720198 - 3720136
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||||||||||||| |||  |||||||  |||||| || || ||||||    
T  3720198 ttttaacttttaaaaagttaaatttatcattttacaccatttgtcaatgcaatattactattt 3720136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 18800242 - 18800197
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcacttttta 251  Q
    |||||||| ||| ||| |||||||||||||||||||||||| ||||    
T  18800242 ttcaacaatattgtaatttttaaaaagttaaatttatcactcttta 18800197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 46423388 - 46423425
Alignment:
Q  221 acttttaaaaagttaaatttatcactttttaccatttt 258  Q
    |||||||| || ||||||||||||||||||||||||||    
T  46423388 acttttaagaaattaaatttatcactttttaccatttt 46423425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 1907717 - 1907626
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||||||| |||  |||||||||||   |||||||| ||||| | | ||||||| ||||||| || | ||||||||||||| ||||    
T  1907717 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaaattaaattcattattttttaccatttttcaat 1907626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 5977809 - 5977757
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||  |||||||||||||||||||||||  ||||||||| || |||||    
T  5977809 ttcaacaattttttaacttttaaaaagttaaatccatcacttttcactatttt 5977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 6999173 - 6999289
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  6999173 agggcaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcatttttcaccattttcca 6999272  T
Q  262 atgctatctttctattt 278  Q
    || |||| |||||||||    
T  6999273 atactatatttctattt 6999289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 16361537 - 16361653
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  16361537 agggcaatgattaaggaagccaaaagtaacatgtttgcattggtttcgacaacattttgacttttataaagttaaatttatcaatttttaccattttcca 16361636  T
Q  262 atgctatctttctattt 278  Q
    ||| ||| |||||||||    
T  16361637 atgttatatttctattt 16361653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 862559 - 862676
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcc 260  Q
    |||||||||| |||||||| ||||||||| |||||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  862559 gagggcaatgattaaggaagccaaaagtagcatgtttgcattggtttcaacaagattttgactcttaaaaagttaaatttatcacttttcaccattttcc 862658  T
Q  261 aatgctatctttctattt 278  Q
    ||| |||| |||||||||    
T  862659 aatactatatttctattt 862676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 2966511 - 2966627
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||||| | ||||||| ||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  2966511 agggcaatggttaaggaagctaaaagtagcatatttgcattggtttcaacaacattttgacttttaaaaaattaaatttatcacttttcaccattttcca 2966610  T
Q  262 atgctatctttctattt 278  Q
    ||| ||| |||||||||    
T  2966611 atgttatatttctattt 2966627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 278
Target Start/End: Complemental strand, 39085952 - 39085814
Alignment:
Q  133 ggtcttgctaaccattgtcctcagccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaag 232  Q
    ||||||||||||||||||||||||        |||||||||||||||  |||||| | ||||||||||||  ||||||||||||||| ||||||||||||    
T  39085952 ggtcttgctaaccattgtcctcaga-------gcaatggttaaggaagtcaaaagcagcatgtttgcattgatttcaacaacattttgacttttaaaaag 39085860  T
Q  233 ttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  39085859 ttaaatttatcactttttatcattttccaatgttatatttctattt 39085814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 17074626 - 17074529
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||||||||||||| |||||| || ||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  17074626 gagggcaatggttaaggaagccaaaaatagcatatttgcattagtttcaacaacattttgtcttttaaaaagttaaatttatcacttttcaccatttt 17074529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 17118542 - 17118395
Alignment:
Q  131 tgggtcttgctaaccattgtcctca-gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaa 229  Q
    ||||||||||||||||||| ||||| ||| ||||| |||||||||||||| |||||| |||||| |||||||| |||||||||||| ||| | |||||||    
T  17118542 tgggtcttgctaaccattgccctcatgccttgaggacaatggttaaggaagccaaaaataacatatttgcattggtttcaacaaca-tttgagttttaaa 17118444  T
Q  230 aagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||| |||| | ||||||||| |  ||| |||||||||    
T  17118443 aagttaaatttatcatttttcaacattttccagtattatatttctattt 17118395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 278
Target Start/End: Original strand, 27495090 - 27495210
Alignment:
Q  158 cctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattt 257  Q
    ||||||||||||||||||||||  ||||||||  ||||||||||| |||||||||||||||| | |||||||| |||||||||||||||||| |||||||    
T  27495090 cctgagggcaatggttaaggaagtcaaaagtagtatgtttgcattggtttcaacaacattttgatttttaaaatgttaaatttatcacttttcaccattt 27495189  T
Q  258 tccaatgctatctttctattt 278  Q
    || |||| ||| ||| |||||    
T  27495190 tctaatgttatatttttattt 27495210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 23685788 - 23685689
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||| |||||||| ||||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  23685788 ggcaatgtttaaggaagccaaaagtaacatgtttgcattgatttcaataacattttgacttttaaaaagttaaatttatcacttttccccattttccaat 23685689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 39401671 - 39401557
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||||||||||||||| ||||||||| |||||||| ||| |||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||    
T  39401671 gggcaatggttaaggaagccaaaagtagcatgtttgtattggtttcaacaaaattttgacttttaaaaagttaaa-ttatcacttttcaccatttttcaa 39401573  T
Q  263 tgctatctttctattt 278  Q
    || ||| |||||||||    
T  39401572 tgttatatttctattt 39401557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 17056196 - 17056099
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||||||||||||| |||||| || ||| |||||||| ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  17056196 gagggcaatggttaaggaagccaaaaatagcatatttgcattggtttcaacaacattttgtcttttaaaaagttaaatttatcacttttcaccatttt 17056099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 17068643 - 17068546
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||||||||||||| |||||| || ||| |||||||| ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  17068643 gagggcaatggttaaggaagccaaaaatagcatatttgcattggtttcaacaacattttgtcttttaaaaagttaaatttatcacttttcaccatttt 17068546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 41436448 - 41436565
Alignment:
Q  161 gagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcc 260  Q
    ||||||||||||||| |||  |||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| | |||||| |    
T  41436448 gagggcaatggttaatgaagtcaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaagtttatcacttttcatcatttttc 41436547  T
Q  261 aatgctatctttctattt 278  Q
    ||| |||| ||| |||||    
T  41436548 aatactatatttttattt 41436565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 17095204 - 17095108
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||||||||||||  ||||| || ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  17095204 agggcaatggttaaggaatgcaaaaatagcatatttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttttcaccatttt 17095108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 11445454 - 11445379
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaattt 240  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||    
T  11445454 gcaatggttaaggaaaccaaaagtaacatgtttgcattggtttcaacaacattttgacatttaaaaagttaaattt 11445379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 765258 - 765172
Alignment:
Q  192 atgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||||    
T  765258 atgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttttcacaattttccaatgttatatttctattt 765172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 9201638 - 9201537
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| |||||||| ||||| |||  ||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  9201638 gccctcagggcaatagttaaagaagtcaaaagtaacatgtttgtattggtt-caacaacattttgacttttaaaaagttaaatttatcacttttcaccat 9201540  T
Q  256 ttt 258  Q
    |||    
T  9201539 ttt 9201537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 1321132 - 1321255
Alignment:
Q  156 gccctgagggcaatgg-ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttacca 254  Q
    ||||| |||||||||| |||||||| |||||  || ||||||| ||||  ||||||||||||||| | ||||||| |||||||||||| | |||||||||    
T  1321132 gccctcagggcaatgggttaaggaagccaaagttagcatgtttacattgatttcaacaacattttgatttttaaagagttaaatttattattttttacca 1321231  T
Q  255 ttttccaatgctatctttctattt 278  Q
    |||||||||| ||| |||||||||    
T  1321232 ttttccaatgttatatttctattt 1321255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 17603811 - 17603898
Alignment:
Q  191 catgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||  |||||| |||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||    
T  17603811 catgtttgcattgatttcaataacattttgacttttaaaaagttaaatttatcattttttatcatttttcaatgctatatttctattt 17603898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 464770 - 464883
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatca-ctttttaccattttccaatg 264  Q
    ||||| ||||||||   |||||||||||||||| |||  |||||| |||||||||||||||||||||||||| ||||||  ||||||||||||| |||||    
T  464770 caatgattaaggaagttaaaagtaacatgtttgtattgatttcaataacattttaacttttaaaaagttaaaattatcatttttttaccatttttcaatg 464869  T
Q  265 ctatctttctattt 278  Q
     ||| |||||||||    
T  464870 ttatatttctattt 464883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 33864349 - 33864442
Alignment:
Q  185 aagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||| |||||||| |||||||||| ||||| |||||||||| ||||||||||| |||||| ||||||||||||||| || ||| |||||    
T  33864349 aagtaacatatttgcattggtttcaacaatattttgacttttaaaatgttaaatttattacttttcaccattttccaatgcgatatttttattt 33864442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 15004905 - 15004985
Alignment:
Q  169 tggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttt 249  Q
    ||||||| |||  |||||||| |||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  15004905 tggttaaagaagtcaaaagtatcatgtttgtattggtttcaacaacattttaatttttaaaaagttaaatttatcactttt 15004985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 33726355 - 33726467
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||||||| ||||| || |||||||| |||  ||||||||| ||||||||||||| |||||||||||||| | |||| |||||||| |||| |    
T  33726355 caatggttaaggaaatcaaaaatagcatgtttgtattgatttcaacaatattttaacttttagaaagttaaatttattatttttcaccatttttcaatac 33726454  T
Q  266 tatctttctattt 278  Q
    ||| ||| |||||    
T  33726455 tatatttttattt 33726467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 44173099 - 44173206
Alignment:
Q  170 ggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatc 269  Q
    |||||| ||| |||||| ||| ||||||| ||| |||||||||||||||||| ||||||||| |||||||||||| |||| | |||||| |||||||||     
T  44173099 ggttaaagaagccaaaa-taatatgtttgtattggtttcaacaacattttaatttttaaaaaattaaatttatcatttttcatcatttttcaatgctata 44173197  T
Q  270 tttctattt 278  Q
    |||||||||    
T  44173198 tttctattt 44173206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 278
Target Start/End: Complemental strand, 44299815 - 44299703
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    |||||||||||||| |||||| ||  ||| || |||| |||||||||| ||||| |||||||||| |||||||||||||||||| |||||||| | | ||    
T  44299815 caatggttaaggaagccaaaaatagtatgcttacattggtttcaacaatattttgacttttaaaatgttaaatttatcacttttcaccatttttcgaggc 44299716  T
Q  266 tatctttctattt 278  Q
    ||| |||||||||    
T  44299715 tatatttctattt 44299703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 35445423 - 35445312
Alignment:
Q  168 atggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaactttt-aaaaagttaaatttatcactttttaccattttccaatgct 266  Q
    ||||||||| ||  |||||||| |||||||| ||| |||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||| ||||| |    
T  35445423 atggttaagcaagtcaaaagtagcatgtttgtattggtttcaacaatattttgacttttgaaaaagttaaatttatcacttttcaccatttttcaatgtt 35445324  T
Q  267 atctttctattt 278  Q
    || ||| |||||    
T  35445323 atatttatattt 35445312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 13998013 - 13997926
Alignment:
Q  191 catgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| |||  ||||||||| ||||||| |||||||||||||||||||||| |||| || ||||| ||||||||| |||||||||    
T  13998013 catgtttgtattgatttcaacaatattttaatttttaaaaagttaaatttatcatttttcacaatttttcaatgctatatttctattt 13997926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 34334290 - 34334183
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    ||||||||||| ||||||| |||||||| ||| | |||||||| ||||||| || ||||||||| ||||| ||| |||||||||||||| ||| | || |    
T  34334290 gttaaggaaactaaaagtagcatgtttgtattggattcaacaatattttaatttgtaaaaagtttaatttgtcattttttaccattttcaaatacaatat 34334191  T
Q  271 ttctattt 278  Q
    ||||||||    
T  34334190 ttctattt 34334183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 2239562 - 2239667
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    |||||| | ||||||||||  || |||| ||| | |||||||| ||||||||||||||||||||||||| |||| ||||||||||||| || ||| || |    
T  2239562 gttaagaataccaaaagtagtatatttgtattggattcaacaatattttaacttttaaaaagttaaattcatcattttttaccatttttcattgcaatat 2239661  T
Q  271 ttctat 276  Q
    ||||||    
T  2239662 ttctat 2239667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 11659233 - 11659334
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||||||||||||| |  || ||| ||||   |||||||| ||||||| |||||||||||||||||  |||||||| || ||||| ||    
T  11659233 agggcaatggttaaggaaaccaaaagcagtatatttacattgaattcaacaatattttaatttttaaaaagttaaattcttcacttttcactatttttca 11659332  T
Q  262 at 263  Q
    ||    
T  11659333 at 11659334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 747585 - 747528
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||  ||||||||||||||||||||||| |||||||||| || ||||||||||    
T  747585 ttcaacaattttttaacttttaaaaagttaaatctatcacttttcactattttccaat 747528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 33848957 - 33849034
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatt 239  Q
    ||||||||||||||||||||||||||||| || |||  ||||  ||||||||   ||| |||||||||||||||||||    
T  33848957 agggcaatggttaaggaaaccaaaagtaatatatttatattaaattcaacaatggtttgacttttaaaaagttaaatt 33849034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 41890255 - 41890182
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaa 229  Q
    ||||| |||||| | |||||||||||||||||||  | ||||||||| | |||||||| |||||||||||||||    
T  41890255 gccctaagggcatttgttaaggaaaccaaaagtagtaggtttgcattggattcaacaatattttaacttttaaa 41890182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 34220740 - 34220668
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||| |||| || ||||||| |  |||||||||    
T  34220740 ttcaacaatattttaacttttaaaaacttaaattcatcacttttcaccacttcccaatgcaagatttctattt 34220668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 2136401 - 2136523
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| |||||| | |||||||||||||||| ||  | ||||| |||   |||||||| ||||| |||||| |||||| |||||   ||||||| | |||    
T  2136401 gcccttagggcacttgttaaggaaaccaaaattagtaggtttgtattgtattcaacaatattttcacttttcaaaagtcaaattctccacttttcatcat 2136500  T
Q  256 tttccaatgctatctttctattt 278  Q
    |||||||||| || |||||||||    
T  2136501 tttccaatgcaatatttctattt 2136523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 29260257 - 29260167
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||||||||||||| | | | ||| |||||   ||||||||  ||||||||||| |||||| |||| |||||||||| |||||||||||    
T  29260257 gttaaggaaaccaaaaatgataagttcgcattgaattcaacaattttttaactttttaaaagtcaaatctatcacttttcaccattttcca 29260167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 3454791 - 3454743
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    |||||||| |||||| |||||||||||||||| |||||||||||||||||    
T  3454791 ttcaacaatatttta-cttttaaaaagttaaagttatcactttttaccat 3454743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 10900344 - 10900272
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||| || ||||||||||||||||| | ||||| ||||||||||| |||||| |||||  || |||||||||    
T  10900344 ttcaataatattttaacttttaaaaaataaaattcatcactttttatcatttttcaatgtgatatttctattt 10900272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 11445364 - 11445313
Alignment:
Q  227 aaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||| |||| |||||||| ||||| ||| |||||||||    
T  11445364 aaaaagttaaatttatcatttttcaccatttttcaatgttatatttctattt 11445313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 34512671 - 34512714
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    |||||||||||||||||| |||| |||||||||| |||||||||    
T  34512671 ttttaacttttaaaaagtcaaatctatcacttttcaccattttc 34512714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 8327004 - 8327038
Alignment:
Q  215 attttaacttttaaaaagttaaatttatcactttt 249  Q
    |||||||||||||||||||||||||| ||||||||    
T  8327004 attttaacttttaaaaagttaaatttttcactttt 8327038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 2805373 - 2805441
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaactttt--aaaaagttaaatttatcactttt 249  Q
    |||||||  ||||||| ||||| |||||||| ||||| ||||||  ||||||||||||| |||||||||    
T  2805373 aaaagtagtatgtttgtattagattcaacaatattttgacttttaaaaaaagttaaattcatcactttt 2805441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 30831636 - 30831705
Alignment:
Q  209 aacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||| ||||| ||||||||||||||||||| |||| ||||||  |||||  ||||| || |||||||||    
T  30831636 aacaatatttttacttttaaaaagttaaattcatcattttttataattttttaatgcaatatttctattt 30831705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 37230253 - 37230306
Alignment:
Q  224 tttaaaaagttaaatttatcactttttaccattttccaatgctatctttctatt 277  Q
    ||||||||||||| |||||||||||| |||||||| |||| | || ||||||||    
T  37230253 tttaaaaagttaagtttatcacttttcaccatttttcaatacaatatttctatt 37230306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 7875318 - 7875203
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||| |||||||| ||||||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  7875318 gggcaatgattaaggaagccaaaagtagcatgtctgcattggtttcaacaatattttgacttttaaaaagttaaatttatcacttttcatcattttccaa 7875219  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  7875218 tgctatatttctattt 7875203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 165 - 276
Target Start/End: Complemental strand, 7274349 - 7274238
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatg 264  Q
    |||||| ||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||    
T  7274349 gcaatgattaaggaaaccaaaagtaacatgtttgtattgatttcaacaacattttaacttttaaaatgttaaatttatcacttttcgtcattttccaatg 7274250  T
Q  265 ctatctttctat 276  Q
     ||| |||||||    
T  7274249 ttatatttctat 7274238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 7880564 - 7880449
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||| |||||||| ||||||||| ||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||| ||    
T  7880564 gggcaatgattaaggaagccaaaagtagcatgtctgtattagtttcaacaatattttgacttttaaaaagttaaatttatcacttttcatcattttctaa 7880465  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  7880464 tgctatatttctattt 7880449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 12191466 - 12191580
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||||||||  |||||||| |||||||| |||  ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||    
T  12191466 ggcaatggttaaggaaggcaaaagtagcatgtttgtattgatttcaacaacattttgacttttaaaaaattaaatttatcacttttcaccatttaccaat 12191565  T
Q  264 gctatctttctattt 278  Q
    ||||| |||||||||    
T  12191566 gctatatttctattt 12191580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 130 - 278
Target Start/End: Original strand, 10855379 - 10855519
Alignment:
Q  130 ttgggtcttgctaaccattgtcctcagccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaa 229  Q
    ||||||||||||||||||||||||       ||||||||||||||| |||| |||||||| ||| |||||||  |||||||||||||||| |||||||||    
T  10855379 ttgggtcttgctaaccattgtcct-------gagggcaatggttaaagaaatcaaaagtagcatatttgcatg-gtttcaacaacattttgacttttaaa 10855470  T
Q  230 aagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||||| | |||||| ||||  ||| |||||||||    
T  10855471 aagttaaatttatcacttttcatcatttttcaatattatatttctattt 10855519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 5578245 - 5578361
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    ||||||||||||||||||  |||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||| || | |  ||||| ||    
T  5578245 agggcaatggttaaggaagtcaaaagtagcatgtttgcatttgtttcaacaatattttgacttttaaaaagttaaatttatcaattctcattatttttca 5578344  T
Q  262 atgctatctttctattt 278  Q
    ||||||| |||||||||    
T  5578345 atgctatatttctattt 5578361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 16437726 - 16437642
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaattt 240  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  16437726 gccctgagggcaatggttaaggaaaccaacagtagcatgtttgcattggtttcaacaatatttttacttttaaaaagttaaattt 16437642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 26572221 - 26572117
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| ||||||||||||||||||  |||||||| |||||||||||| |||| ||||| ||||||||||||||||  ||||||||||||||||||| |||    
T  26572221 gccctcagggcaatggttaaggaagtcaaaagtagcatgtttgcattggttttaacaatattttaacttttaaaatattaaatttatcactttttatcat 26572122  T
Q  256 tttcc 260  Q
    |||||    
T  26572121 tttcc 26572117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 8324248 - 8324126
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| ||| ||||||||||||||   |||| ||||||||||  ||| |||||||||||||||||| |||||||||||||||||||||| |||| || ||    
T  8324248 gccctcaggacaatggttaaggaaggtaaaaataacatgtttatattggtttcaacaacattttaatttttaaaaagttaaatttatcatttttcacaat 8324149  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||  ||||||||| |||||||||    
T  8324148 ttctcaatgctatgtttctattt 8324126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 31220455 - 31220369
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||||||||||||  |||||||||||   ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  31220455 ttaaggaaaccaaaagtagtatgtttgcattttattcaataacattttaacttttaaaaagttaaattcatcactttttaccatttt 31220369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 32786041 - 32786110
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaag 232  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||    
T  32786041 gggcaatggttaaggaaaccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaag 32786110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 6866915 - 6867002
Alignment:
Q  191 catgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  6866915 catgtttgcattgatttcaacaacattttgacttttaaaaggttaaatttatcacttttcaccattttcaaatgctatatttttattt 6867002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 21186145 - 21186059
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||| |||||||| ||  |||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||    
T  21186145 ttaaggaaatcaaaagtagcaattttgcattagattcaataatattttaacttttaaaaagttaaattcatcactttttaccatttt 21186059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 12175535 - 12175646
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||||||   |||||||  ||||||||||| |||| || ||| ||||||||||||||||||||||||||||| |||||| |||||| |||| |    
T  12175535 caatggttaaggaacttaaaagtagtatgtttgcattggttttaataac-ttttaacttttaaaaagttaaatttatcagtttttatcatttttcaatac 12175633  T
Q  266 tatctttctattt 278  Q
    ||| ||| |||||    
T  12175634 tatatttatattt 12175646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 29692427 - 29692363
Alignment:
Q  214 cattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||| |||| |||| |||||||||    
T  29692427 cattttgactcttaaaaagttaaatttatcacttttcaccatttttcaatactatatttctattt 29692363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 34780112 - 34780023
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||||||||||||| ||||||||  || ||| ||||   ||||||||  ||||||||||||||||||||||||  |||||||| |||||    
T  34780112 caatggttaaggaaatcaaaagtagtatatttacattgaattcaacaatgttttaacttttaaaaagttaaattcttcacttttcaccat 34780023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 28014638 - 28014707
Alignment:
Q  194 gtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||| | |||||||| ||||||||||||||||||| ||| | |||| |||| ||||||| |||||    
T  28014638 gtttgcattggattcaacaatattttaacttttaaaaagtcaaactcatcatttttcaccatttcccaat 28014707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 1947424 - 1947476
Alignment:
Q  210 acaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||| |||| ||||||| |||||| |||||| ||||||||||||||||||||    
T  1947424 acaactttttgacttttagaaagttgaatttaacactttttaccattttccaa 1947476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 19645941 - 19645995
Alignment:
Q  128 ttttgggtcttgctaaccattgtcctcagccctgagggcaatggttaaggaaaccaaaagta 189  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||| |||||||    
T  19645941 ttttgggtcttgctaaccattgtcctc-------agggcaatggttaaggaaactaaaagta 19645995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 29964274 - 29964349
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatt 239  Q
    |||||||||||||||| |||||| ||| || ||| ||||   ||||||||  |||| |||||||||||||||||||    
T  29964274 ggcaatggttaaggaacccaaaaataatatatttacattgaattcaacaatgttttgacttttaaaaagttaaatt 29964349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 12226475 - 12226353
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| ||| ||||||||||||||||||||| ||  || ||| ||||   ||||||||  |||| ||||| |||||||||||||  |||||||| | |||    
T  12226475 gccctcaggacaatggttaaggaaaccaaaaatagtatatttacattgaattcaacaatgtttttactttcaaaaagttaaattcttcacttttaatcat 12226376  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||  |||| | || |||||||||    
T  12226375 ttctcaatacaatgtttctattt 12226353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 5029546 - 5029489
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||  ||||||||||||||||||||||||| |  || |||||||||||| ||||    
T  5029546 ttcaacactattttaacttttaaaaagttaaattcacaacattttaccatttttcaat 5029489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 27127601 - 27127529
Alignment:
Q  206 ttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||| || || ||||||||||||||||||| |||| |||| |||||||  |||| | || |||||||||    
T  27127601 ttcaacaatatcttgacttttaaaaagttaaattcatcatttttcaccatttctcaatacaatatttctattt 27127529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 32786259 - 32786303
Alignment:
Q  234 taaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||| ||||| |||||||||||||| ||| |||||||||    
T  32786259 taaatttatctcttttcaccattttccaatgttatatttctattt 32786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 18068952 - 18069049
Alignment:
Q  181 ccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||  |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  18068952 ccaaaagtataatgtttgcattagtttcaacaacattttgacctttaaaaagttaaatttatcacttttcaccattttccaatgctatatttctattt 18069049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 26672755 - 26672877
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||||||||||||||||||||||| ||||| ||  ||||||  ||| |||||||||||||||| ||||||||||| |||||||||||  |||||| |||    
T  26672755 gccctgagggcaatggttaaggaaatcaaaaatacgatgtttatattggtttcaacaacattttgacttttaaaaaattaaatttatccttttttatcat 26672854  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||||||||||||| |||||||||    
T  26672855 tttccaatgctatatttctattt 26672877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 10694781 - 10694874
Alignment:
Q  165 gcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    ||||||||||||||| ||||||||| ||| ||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10694781 gcaatggttaaggaagccaaaagtatcatatttgcattgatttcaacaacattttgacttttaaaaagttaaatttatcactttttaccatttt 10694874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 8018733 - 8018848
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgttt-gcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    |||||||||||||||| |||||||||  |||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  8018733 ggcaatggttaaggaagccaaaagtagtatgttttgcattagttttaacaacattttgatttttaaaaagttaaatttatcacttttcaccattttccaa 8018832  T
Q  263 tgctatctttctattt 278  Q
    |  ||| |||||||||    
T  8018833 tattatatttctattt 8018848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 14855513 - 14855406
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||| || |||||  ||| |||| |    
T  14855513 gttaaggaaaccaaaagtagcatgtttgcattagttttaacaacattttaacttttaaaatgttaaatttatctcttttcactattttttaatactatat 14855414  T
Q  271 ttctattt 278  Q
    ||||||||    
T  14855413 ttctattt 14855406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 26195490 - 26195395
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||||    
T  26195490 aaaagtagcatgtttgtattggtttcaacaacattttaacttttaaaaagttaaatttatcacttttcacaattttccaatgttatatttctattt 26195395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 6433509 - 6433631
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| || |||||||||||||||  ||||||||  || |||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  6433509 gccctcagagcaatggttaaggaagacaaaagtagtatctttgcattggttttaacaatattttaacttttaaaaagttaaatttataactttttaccat 6433608  T
Q  256 tttccaatgctatctttctattt 278  Q
    ||| ||||||||| ||| |||||    
T  6433609 ttttcaatgctatatttttattt 6433631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 6939152 - 6939245
Alignment:
Q  185 aagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||| |||||||||    
T  6939152 aagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatttatcacttgtcaccatttttcaatgttatatttctattt 6939245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 19389441 - 19389332
Alignment:
Q  169 tggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctat 268  Q
    |||||||||||| |||||||| ||||||||||||  ||||||| | ||||| ||||||||||||||||||||||||||||| || |||||||||| ||||    
T  19389441 tggttaaggaaatcaaaagtagcatgtttgcattgttttcaacgatattttgacttttaaaaagttaaatttatcacttttcacaattttccaatactat 19389342  T
Q  269 ctttctattt 278  Q
     |||||||||    
T  19389341 atttctattt 19389332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 25249450 - 25249363
Alignment:
Q  191 catgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  25249450 catgtttgcattggtttcaacaatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttttattt 25249363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 21016185 - 21016079
Alignment:
Q  172 ttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctt 271  Q
    ||||||||  |||||||| |||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||| ||| ||    
T  21016185 ttaaggaagtcaaaagtagcatgtttgcattggcttcaacaacattttgacttttaaaaagttaaatctatcacttttaaccatttttcaatgttatatt 21016086  T
Q  272 tctattt 278  Q
    |||||||    
T  21016085 tctattt 21016079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 4989909 - 4990020
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||||||||||  |||||||| |||||||||||| |||||||||   |||| || ||||||||||||||||||||| |||| || ||||||||||    
T  4989909 ggcaatggttaaggaagtcaaaagtagcatgtttgcattggtttcaaca---ttttgacatttaaaaagttaaatttatcatttttcactattttccaat 4990005  T
Q  264 gctatctttctattt 278  Q
    ||||| |||||||||    
T  4990006 gctatatttctattt 4990020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 45337983 - 45338091
Alignment:
Q  170 ggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatc 269  Q
    ||||||||||||||||||||  ||||||||||| || |||| |||||||| | |||||||||||||||||||||| |||| |||||||| ||||| |||     
T  45337983 ggttaaggaaaccaaaagtagtatgtttgcattggtctcaataacattttgatttttaaaaagttaaatttatcatttttcaccatttttcaatgttata 45338082  T
Q  270 tttctattt 278  Q
    |||||||||    
T  45338083 tttctattt 45338091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 33741637 - 33741525
Alignment:
Q  135 tcttgctaaccattgtcctcagccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagtt 234  Q
    |||||||||||||||| ||  ||||| || |||||| |||||  |  |||||||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  33741637 tcttgctaaccattgttct--gccctcagtgcaatgattaagagagtcaaaagtaacatatttgcattggtttcaacaatattttaacttttaaaaagtt 33741540  T
Q  235 aaatttatcactttt 249  Q
    |||||||||| ||||    
T  33741539 aaatttatcattttt 33741525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 37433239 - 37433338
Alignment:
Q  164 ggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||| ||||||||   |||||||  ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||    
T  37433239 ggcaatgattaaggaagttaaaagtagtatgtttgcattggtttcaacaacattttaac-tttaaaaagttaaatttatcacttttcatcatttttcaat 37433337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 21016234 - 21016321
Alignment:
Q  191 catgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    |||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||  ||| |||||||||    
T  21016234 catgtttgcattggcttcaacaacattttgacttttaaaaagttaaatctatcacttttcaccatttttcaatattatatttctattt 21016321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 34714048 - 34713953
Alignment:
Q  173 taaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctat 268  Q
    |||||||  |||||||| |||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||  |||||||| |||| ||||    
T  34714048 taaggaagtcaaaagtagcatgtttgcattggtttcaacaacattttgacttttaagaagtgaaatttatcactttgcaccatttttcaatactat 34713953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 26892795 - 26892873
Alignment:
Q  200 attagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||| || |||||||||||||||||||||||||||||| ||||||| ||||| ||||  ||| |||||||||    
T  26892795 attagtttcaataatattttaacttttaaaaagttaaatttatcattttttacaatttttcaatattatatttctattt 26892873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 20212518 - 20212433
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatt 256  Q
    ||||||||||||||||||| || |||| |||| | |||||| | ||||||||||||||||| ||||||| ||||||||| ||||||    
T  20212518 gttaaggaaaccaaaagtagcaggtttacattggattcaacgatattttaacttttaaaaacttaaattcatcacttttcaccatt 20212433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 3174436 - 3174532
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaac----attttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    ||||||||| ||||||||| |||||||| ||| |||||||||||    ||||| ||||||||||||| |||||||| | |||| |||||||||||||    
T  3174436 gttaaggaagccaaaagtagcatgtttgtattggtttcaacaacatttattttgacttttaaaaagtcaaatttataatttttcaccattttccaat 3174532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 30351583 - 30351666
Alignment:
Q  183 aaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcac-tttttaccattttccaatgc 265  Q
    |||||||| ||||||||||| | |||||||| ||||||||||||||||||||||| |  |||| ||||||||||||| ||||||    
T  30351583 aaaagtaatatgtttgcattggattcaacaatattttaacttttaaaaagttaaactcgtcacttttttaccatttttcaatgc 30351666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 44874308 - 44874412
Alignment:
Q  166 caatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgc 265  Q
    ||||||||||||||  |||||||| |||||||||||| |||||||||||        ||||||||| ||||||||||||||||| |||||||| |||||     
T  44874308 caatggttaaggaagacaaaagtagcatgtttgcattggtttcaacaac--------ttttaaaaatttaaatttatcacttttcaccatttttcaatgt 44874399  T
Q  266 tatctttctattt 278  Q
    ||| ||| |||||    
T  44874400 tatatttatattt 44874412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 39972290 - 39972189
Alignment:
Q  162 agggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttcca 261  Q
    |||||| | |||||||||||||||| ||  |||||||||||   || |||||  |||||||||||||||||| ||||| ||||||||| ||||||| |||    
T  39972290 agggcactagttaaggaaaccaaaaatagtatgtttgcattgaattgaacaattttttaacttttaaaaagtcaaattcatcacttttcaccatttccca 39972191  T
Q  262 at 263  Q
    ||    
T  39972190 at 39972189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 7532767 - 7532872
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatct 270  Q
    |||||||||||||||||||  | ||||| ||| | |||||||| |||  ||||||||||||  |||||| ||||||||| ||||||||||||| | || |    
T  7532767 gttaaggaaaccaaaagtagtaggtttgaattggattcaacaatatt--aacttttaaaaacctaaattcatcacttttcaccattttccaatacaatat 7532864  T
Q  271 ttctattt 278  Q
    ||||||||    
T  7532865 ttctattt 7532872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 4308789 - 4308876
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    |||||||||||||||| ||  | ||||| ||| | |||||||  ||||||||||||| ||||||||||| |||| |||||||||||||    
T  4308789 gttaaggaaaccaaaaatagtaggtttgtattggattcaacactattttaacttttataaagttaaattcatcattttttaccatttt 4308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 5129545 - 5129478
Alignment:
Q  211 caacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||| ||||||||||| ||||||||||||||||| | |||||| ||||||||| |||| ||||    
T  5129545 caacattttgacttttaaaaaattaaatttatcacttttcatcatttttcaatgctatatttcaattt 5129478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 7444258 - 7444317
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaa 230  Q
    |||||||||||||||||||  | ||||||||||| |||||||| ||||||||||||||||    
T  7444258 gttaaggaaaccaaaagtagtaggtttgcattagattcaacaatattttaacttttaaaa 7444317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 278
Target Start/End: Original strand, 38869969 - 38870091
Alignment:
Q  156 gccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccat 255  Q
    ||||| || |||||||| ||||||||||||||||  || ||| ||||   |||| ||| ||||| |||||||||| ||| ||||  |||||||| | |||    
T  38869969 gccctcagagcaatggtcaaggaaaccaaaagtagtatatttacattgaattcatcaatattttgacttttaaaatgttgaattcttcacttttcatcat 38870068  T
Q  256 tttccaatgctatctttctattt 278  Q
    |||||||||| || |||||||||    
T  38870069 tttccaatgcaatgtttctattt 38870091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 6396378 - 6396315
Alignment:
Q  195 tttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccatttt 258  Q
    |||| ||||| ||||||||||||||||| ||||||| |||||||| || ||| || ||||||||    
T  6396378 tttgtattagattcaacaacattttaacgtttaaaatgttaaattcattactcttcaccatttt 6396315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 20169309 - 20169372
Alignment:
Q  215 attttaacttttaaaaagttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||||| ||||| || | ||||||| |||||| ||||| || |||||||||    
T  20169309 attttaacttttaaaaagtcaaattcataattttttacaattttctaatgcaatatttctattt 20169372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 35974005 - 35973927
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttt 249  Q
    ||||| |||||||||| ||| | ||||| || |  |||||||| |||||| |||||||||| |||||||||||| ||||    
T  35974005 gttaatgaaaccaaaaataataagtttgtatgaaattcaacaatattttatcttttaaaaaattaaatttatcattttt 35973927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 17320045 - 17320000
Alignment:
Q  209 aacaacattttaacttttaaaaagttaaatttatcactttttacca 254  Q
    ||||| ||||||||||||||||||||||||| ||| ||||| ||||    
T  17320045 aacaatattttaacttttaaaaagttaaattcatctcttttcacca 17320000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 39491891 - 39491858
Alignment:
Q  216 ttttaacttttaaaaagttaaatttatcactttt 249  Q
    |||||||||||||||||||||||| |||||||||    
T  39491891 ttttaacttttaaaaagttaaattcatcactttt 39491858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 5300203 - 5300263
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaa 231  Q
    |||||||||||||||||||  | |||||||||   |||||||| ||||| |||||||||||    
T  5300203 gttaaggaaaccaaaagtagtaagtttgcattgaattcaacaatattttgacttttaaaaa 5300263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 25381796 - 25381708
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttc 259  Q
    ||||||||||| |||| ||| ||||||| ||| | | |||||| ||||||||||| ||||| | ||||| |||| ||||| | ||||||    
T  25381796 gttaaggaaactaaaaataaaatgtttgaattggatacaacaatattttaactttaaaaaaataaaattaatcatttttttctattttc 25381708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 392261 - 392164
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaatgctat 268  Q
    ||||||||| | ||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  392261 gttaaggaagcgaaaagtagcatgtttgcatcggtttcaacaacattttgacttttaaaaagttaaatttatcactttttaccatttttcaatgctat 392164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 16908 - 16794
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||| |||||||| |||| || ||||| |||    
T  16908 gggcaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttacatttatcatttttcactatttt-caa 16810  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  16809 tgctatatttctattt 16794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 27076 - 26962
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||| |||||||| |||| || ||||| |||    
T  27076 gggcaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttacatttatcatttttcactatttt-caa 26978  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  26977 tgctatatttctattt 26962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 37242 - 37128
Alignment:
Q  163 gggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaa 262  Q
    ||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||| |||||||| |||| || ||||| |||    
T  37242 gggcaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttacatttatcatttttcactatttt-caa 37144  T
Q  263 tgctatctttctattt 278  Q
    |||||| |||||||||    
T  37143 tgctatatttctattt 37128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 4764 - 4705
Alignment:
Q  182 caaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaattta 241  Q
    |||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||    
T  4764 caaaagtagcatgtttgcattaatttcaacaacatattgacttttaaaaagttaaattta 4705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 4337 - 4292
Alignment:
Q  233 ttaaatttatcactttttaccattttccaatgctatctttctattt 278  Q
    ||||||||||||||||| || ||||||||||||||| ||| |||||    
T  4337 ttaaatttatcacttttcacaattttccaatgctatatttttattt 4292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 39553 - 39674
Alignment:
Q  155 agccctgagggcaatggttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttttacca 254  Q
    |||||| ||||||||||||||||||||||||||||  || ||| ||||   |||||||  || || |||||||||||||||||||  ||| |||| || |    
T  39553 agccctcagggcaatggttaaggaaaccaaaagtagtatatttacattgaattcaaca--atgttgacttttaaaaagttaaattcttcagttttcacta 39650  T
Q  255 ttttccaatgctatctttctattt 278  Q
    ||||||||| | || |||||||||    
T  39651 ttttccaatacaatgtttctattt 39674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 37507 - 37430
Alignment:
Q  171 gttaaggaaaccaaaagtaacatgtttgcattagtttcaacaacattttaacttttaaaaagttaaatttatcactttt 249  Q
    |||||||||| ||||||||  ||||| ||||| | ||||| |||||||| |||||| |||||||||||| |||| ||||    
T  37507 gttaaggaaatcaaaagtagaatgtt-gcattggattcaataacattttgacttttgaaaagttaaattcatcattttt 37430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold2122
Description:

Target: scaffold2122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 711 - 655
Alignment:
Q  207 tcaacaacattttaacttttaaaaagttaaatttatcactttttaccattttccaat 263  Q
    |||||||  ||||||||||||||||||| |||| |  |||||| |||||||||||||    
T  711 tcaacaattttttaacttttaaaaagttgaattcacaacttttcaccattttccaat 655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University