View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15509_high_1 (Length: 595)
Name: NF15509_high_1
Description: NF15509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15509_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 118 - 568
Target Start/End: Original strand, 26310335 - 26310786
Alignment:
| Q |
118 |
aaggtgcataagtctagctacttagcattcttt---gtaaaattgaaaaaagaaagtaatttaatttaatcaattttgttccaagttttgagcattatgt |
214 |
Q |
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| T |
26310335 |
aaggtgcataagtctagctacttagcattcttttttgtaaaattgaaaaaagaaagtaatttaatttaatcaaatttgttccaaggtttgagcattatgt |
26310434 |
T |
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| Q |
215 |
ttctaatagtttgtaaattggtgaactcattaacttgagttggaatcctcgatcacgacgtttggtataataattttgggatttttatcaattgaaccga |
314 |
Q |
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| T |
26310435 |
ttctaatagtttgtaaattggtgaactcattaacttgagttggaatcctcgatcacgacgtttggtataataattttgggatttttatcagttgagccga |
26310534 |
T |
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| Q |
315 |
gatttgtgagctttgccttcttctcttattctatatttttagagaatgaatcaaaattatttgaacgacaattttcatannnnnnnagtgaaattacaca |
414 |
Q |
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| T |
26310535 |
gatttgtgggcgttgccttcttatcttattctaaattttttgagaatgaatcaaaattatttgaatgacaattttcata-ttttatagtgaaattacaca |
26310633 |
T |
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| Q |
415 |
tatttgatttctttgaaatatctttattttgtaaacnnnnnnnnttatttattttatttctttttacattcttatgcattgtttaacataagcaaagctt |
514 |
Q |
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| T |
26310634 |
tatttgatttctttgaattatctttattttgtaaacaaaaaata-tatttattttttttctttttacattcttatgcattgtttaacataagcaaagctt |
26310732 |
T |
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| Q |
515 |
ggaaaatagtaaagttatgaaaacaacataatcaaataagtttccccgatgtca |
568 |
Q |
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| T |
26310733 |
ggaaaatagtaaagttatgaaaacaacataatcaaataagtttccccgatgtca |
26310786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 26309943 - 26309989
Alignment:
| Q |
72 |
aaggaatcttgtttgaaccttggataaactcaatttctccacactta |
118 |
Q |
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| T |
26309943 |
aaggaatcttgtttgaaccttggataaactcaatttctccacactta |
26309989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 26309886 - 26309922
Alignment:
| Q |
15 |
aatgtcattaatatgtaagggtcttatttgccgtttt |
51 |
Q |
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| T |
26309886 |
aatgacattaatatgtaagggtcttattttccgtttt |
26309922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 47931567 - 47931487
Alignment:
| Q |
164 |
aagaaagtaatttaatttaatcaattttgttccaagttttgagcattatgtttctaatagtttgtaaattggtgaactcat |
244 |
Q |
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| T |
47931567 |
aagaaagtcatttaatttaatcacttttgttttatgattttagcctcatgtttttaatagttagtcaattggtgaactcat |
47931487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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