View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15509_low_11 (Length: 232)
Name: NF15509_low_11
Description: NF15509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15509_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 34289252 - 34289056
Alignment:
| Q |
18 |
ttttcttgaacatgcagattgaaaatcaacattagcaaattgattannnnnnnaatattattttgtaggatgagtttgtgggagatcatgtaagtttaac |
117 |
Q |
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| T |
34289252 |
ttttcttgaacatgcagattgaaaatcaacattagcaaattgattatttttttaatattattttgtaggatgagtttgtgggagatcatgtaagtttaac |
34289153 |
T |
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| Q |
118 |
ttaacttctttgctcatagaagaatgtaacaaaatcaacatcttgttctctcattcaaccatgagtagtcttgagaatcttcagaagctagaagtat |
214 |
Q |
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| T |
34289152 |
ttaacttctttgctcatagaagaatgtaacaaaatcaacatcttgttctctcattcaaccatgagtagtcttgagaatcttcagaagctagaagtat |
34289056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 34375392 - 34375490
Alignment:
| Q |
115 |
aacttaacttctttgctcatagaagaatgtaacaaaatcaacatcttgttctctcattcaaccatgagtagtcttgagaatcttcagaagctagaagta |
213 |
Q |
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| T |
34375392 |
aacttaacttctttgctcatagaagcttgcaacaaaattagcatcttaatctctcattcatctttggggagtcttgagcatcttgaaaagctagaagta |
34375490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 15892763 - 15892665
Alignment:
| Q |
115 |
aacttaacttctttgctcatagaagaatgtaacaaaatcaacatcttgttctctcattcaaccatgagtagtcttgagaatcttcagaagctagaagta |
213 |
Q |
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| T |
15892763 |
aacttaacttctttgctcatagaaacatgtaacaaagtcaacatattgttctctcattcaatcatgtgtagtcttgagcatcttcaaaagctcgaagta |
15892665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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