View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15509_low_12 (Length: 227)
Name: NF15509_low_12
Description: NF15509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15509_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42007997 - 42007777
Alignment:
| Q |
1 |
tcttaatggtaacattcccagcagacaaagcagcttcaccaaatagagaaacagcatctttaacagattgaataggtgaattagtgtcaatctctccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42007997 |
tcttaatggtaacattcccagcagacaaagcagcttcaccgaatagagaaacagcatctttaacagattgaataggtgaattagtgtcaatctctccaac |
42007898 |
T |
|
| Q |
101 |
cactgattttgttgatttacgagactcggtaacactctgctcgattctagctaccattatgcctttgaactttgaatacctgctaaattacaatctacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
42007897 |
cactgattttgttgatttacgagactcggtaacactctgcttgattctagctaccattatgcctttgaactttgaaaacctgctaaattacaatttacaa |
42007798 |
T |
|
| Q |
201 |
gatgttacattatcaccatca |
221 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
42007797 |
gatgttacattatcatcatca |
42007777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1243338 - 1243118
Alignment:
| Q |
1 |
tcttaatggtaacattcccagcagacaaagcagcttcaccaaatagagaaacagcatctttaacagattgaataggtgaattagtgtcaatctctccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1243338 |
tcttaatggtaacattcccagcagacaaagcagcttcaccaaatagagaaacagcatctttaacagattgaataggtgaattagtgtcaatctctccaac |
1243239 |
T |
|
| Q |
101 |
cactgattttgttgatttacgagactcggtaacactctgctcgattctagctaccattatgcctttgaactttgaatacctgctaaattacaatctacaa |
200 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
1243238 |
cactgaatttgttgatttacaagacttggtaacactctgcttgattctagctaccattatgcctttgaactttgaaaacctgctaaattacaatttacaa |
1243139 |
T |
|
| Q |
201 |
gatgttacattatcaccatca |
221 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
1243138 |
gatgttacattatcatcatca |
1243118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 23784981 - 23784893
Alignment:
| Q |
22 |
cagacaaagcagcttcaccaaatagagaaacagcatctttaacagattgaataggtgaattagtgtcaatctctccaaccactgatttt |
110 |
Q |
| |
|
|||| |||||| |||||||||||||||| |||||||||||||| || |||| ||||| | |||||||||||||||||| ||| |||| |
|
|
| T |
23784981 |
cagagaaagcaccttcaccaaatagagacacagcatctttaacggactgaaaaggtgggctggtgtcaatctctccaacctctggtttt |
23784893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University