View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15509_low_3 (Length: 373)
Name: NF15509_low_3
Description: NF15509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15509_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 357
Target Start/End: Original strand, 21092854 - 21093189
Alignment:
| Q |
22 |
aatggaagacttctggaaaagagcgaagacattcgccgaagaagccgcnnnnnnntcccaatctctaacaacctcctccgccacttctcgaatcgccgat |
121 |
Q |
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| T |
21092854 |
aatggaagacttctggaaaagagcgaagacattcgccgaagaagccgcaaaaaaatcccaatctctaaccacctcctccgccacttctcgaatcgccgat |
21092953 |
T |
|
| Q |
122 |
ctcgtctccgaaaccgccaagaaatccaaagaactcgccgccgaagcttccaagaaagcagatgagatcaaatccgccgctctccgtcaagccgatcaga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21092954 |
ctcgtctccgaaaccgccaagaaatccaaagaactcgccgccgaagcttccaagaaagcagatgagatcaaatccgccgctctccgtcaagccgatcaga |
21093053 |
T |
|
| Q |
222 |
tcaagtccttttctgataacatctccattcctcctcaattctccgccattgcagccgccgcaacaagttctaccgtagctcctccggtggaaaaccttga |
321 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21093054 |
tcaagtccttttccgataacatctccattcctcctcaattctccgccattgcagccgccgcaacaagttctaccgtagctcctccggtggaaaaccttga |
21093153 |
T |
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| Q |
322 |
acgatttggtatcactgatgatcttcgatcgtttgt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
21093154 |
acgatttggtatcactgatgatcttcgatcgtttgt |
21093189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 21090800 - 21091046
Alignment:
| Q |
22 |
aatggaagacttctggaaaagagcgaagacattcgccgaagaagccgcnnnnnnn-tcccaatctctaacaacctcctccgccacttctcgaatcgccga |
120 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21090800 |
aatggaagacttctggaaaagagtgaagacattcgccgaagaagccgcaaaaaaaatcccaatctctaacaacctccttcgccacttctcgaatcgccga |
21090899 |
T |
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| Q |
121 |
tctcgtctccgaaaccgccaagaaatccaaagaactcgccgccgaagcttccaagaaagcagatgagatcaaatccgccgctctccgtcaagccgatcag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21090900 |
tctcgtctccgaaaccgccaagaaatccaaagaactcgccgctgaag--------aaagcaaatgagatcaaatccgccgctctccgtcaagccgatcag |
21090991 |
T |
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| Q |
221 |
atcaagtccttttctgataacatctccattcctcctcaattctccgccattgcag |
275 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21090992 |
atcaagtccttttccgataacatctccattcctcctcaattctccgccattgcag |
21091046 |
T |
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