View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15509_low_4 (Length: 296)
Name: NF15509_low_4
Description: NF15509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15509_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 3134444 - 3134603
Alignment:
| Q |
1 |
ctattcatattgattatattgttgcaaacactattccaaaaaatggagaagagtggaaaattgaaaataatttttggcggtaaaacgatctatgatgaaa |
100 |
Q |
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| T |
3134444 |
ctattcatattgattatattgttgcaaacactataccaaaaaatggagaagagtggaaaattgaaaataatttttagcggtaaaacgatctatgatgaaa |
3134543 |
T |
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| Q |
101 |
gaacctctaacaacaatgttcattcaacactacaaatcaatcctaatgttattagggaaa |
160 |
Q |
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| T |
3134544 |
gaacctctaacaacaatgttcattcaacactacaaatcaatcctaatgttattagggaaa |
3134603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 3747603 - 3747484
Alignment:
| Q |
41 |
aaatggagaagagtggaaaattgaaaataatttttggcggtaaaacgatctatgatgaaagaacctctaacaacaatgttcattcaacactacaaatcaa |
140 |
Q |
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|||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3747603 |
aaatagagaagaggggaaaattgaaaatattttttggtggtaaaacgatctatgatgaaagaacctctaacaacaatgttcattcaacaatacaaatcaa |
3747504 |
T |
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| Q |
141 |
tcctaatgttattagggaaa |
160 |
Q |
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| T |
3747503 |
tctaaatgttgttagggaaa |
3747484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 276
Target Start/End: Original strand, 3134905 - 3135016
Alignment:
| Q |
166 |
aacttgtcatcaacgagcttctaaattttaaacnnnnnnnnactccaaaaaatatacattggtctttttt-gaatgagtattgatagattaaaaactaga |
264 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |
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| T |
3134905 |
aacttgtcatcaacgagcttctaaattttaaacttttttttactgcaaaaaatatacattggtcttttttcgtatgagtattgatagattaaaaattaga |
3135004 |
T |
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| Q |
265 |
aaggtacaatat |
276 |
Q |
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| T |
3135005 |
aaggtacaatat |
3135016 |
T |
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