View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15509_low_6 (Length: 256)
Name: NF15509_low_6
Description: NF15509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15509_low_6 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 42677017 - 42677265
Alignment:
| Q |
8 |
ccaagaatatcaaagcgaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattttttccatttgagcatggtgctga |
107 |
Q |
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| T |
42677017 |
ccaagaaaatcaaagcgaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattctatccatttgagcatggtgctga |
42677116 |
T |
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| Q |
108 |
ttttttgtcgttggaagctggtcctagccgcaaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggag |
207 |
Q |
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| T |
42677117 |
ttttttgtcgttggaagctggtcctagtcgcaaaccattggagaatacttcccatgttttgtatattggtttgattccacatggcttctaagagatggag |
42677216 |
T |
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| Q |
208 |
atggcggaagcttattttggacaatttggaaccatcaagagattgagaa |
256 |
Q |
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| T |
42677217 |
atggcgaaagcttattttggacaatttggaaccatcaagagattgagaa |
42677265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 52834967 - 52835007
Alignment:
| Q |
216 |
agcttattttggacaatttggaaccatcaagagattgagaa |
256 |
Q |
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| T |
52834967 |
agcttattttggacaattcggtaccgtcaagagattgagaa |
52835007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 48969581 - 48969541
Alignment:
| Q |
216 |
agcttattttggacaatttggaaccatcaagagattgagaa |
256 |
Q |
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| T |
48969581 |
agcttattttggacaatttggaaccatcaagagattgagaa |
48969541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 48969784 - 48969712
Alignment:
| Q |
139 |
aaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggagatgg |
211 |
Q |
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| T |
48969784 |
aaacaattggagaattcttcccctgttttgtatattggtcggattccacatggcttctatgagaaggagatgg |
48969712 |
T |
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