View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15509_low_8 (Length: 247)
Name: NF15509_low_8
Description: NF15509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15509_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 42677326 - 42677514
Alignment:
| Q |
1 |
ttgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgtttttt |
100 |
Q |
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| T |
42677326 |
ttgttgccgatactatgcacaattatttgctttttgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgtttttt |
42677425 |
T |
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| Q |
101 |
aagtgtttgtaccgattctattatgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
189 |
Q |
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| T |
42677426 |
aagtgtttgtaccgattctattgtgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
42677514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 42677520 - 42677553
Alignment:
| Q |
206 |
atgtgacggtgagttttgtttgtggtgatgatgt |
239 |
Q |
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| T |
42677520 |
atgtgacggtgagttttgtttgtggtgatgatgt |
42677553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52835083 - 52835123
Alignment:
| Q |
1 |
ttgttgccgatactatgcacaattatttgctttgtgaacac |
41 |
Q |
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| T |
52835083 |
ttgttgctgatactatgcacaattatttgctctttgaacac |
52835123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 48968883 - 48968805
Alignment:
| Q |
1 |
ttgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttca |
83 |
Q |
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| T |
48968883 |
ttgttgctgatactatgcacaattatttgctttttgaacac----ctactacaggtttttgtggtaccttcagaacatgttca |
48968805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 15496130 - 15496097
Alignment:
| Q |
206 |
atgtgacggtgagttttgtttgtggtgatgatgt |
239 |
Q |
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| T |
15496130 |
atgtggcggtgagttttgtttgtggtgatgatgt |
15496097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 6705752 - 6705719
Alignment:
| Q |
206 |
atgtgacggtgagttttgtttgtggtgatgatgt |
239 |
Q |
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| T |
6705752 |
atgtggcggtgagttttgtttgtggtgatgatgt |
6705719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 40900436 - 40900403
Alignment:
| Q |
206 |
atgtgacggtgagttttgtttgtggtgatgatgt |
239 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
40900436 |
atgtggcggtgagttttgtttgtggtgatgatgt |
40900403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
| Q |
130 |
acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca |
178 |
Q |
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| T |
40900512 |
acgctagccatcaattgggaaatattgcaaagggaggttcattcataca |
40900464 |
T |
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