View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1550_high_7 (Length: 269)
Name: NF1550_high_7
Description: NF1550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1550_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 41572796 - 41572544
Alignment:
| Q |
18 |
gctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacg |
117 |
Q |
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| T |
41572796 |
gctatggagcttccggttaacatgtttctgctgtgggaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcatg |
41572697 |
T |
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| Q |
118 |
ccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtc-ggtggagggtacggtggaggctgtgaaggttatatcgag |
216 |
Q |
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| T |
41572696 |
ccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtcaggtggagggtacggtggaggctgtgaaggttatatcgtg |
41572597 |
T |
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| Q |
217 |
gagatgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtgga |
269 |
Q |
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| T |
41572596 |
gagatgtattcttagccgtttgaaggtgccggcgtgtttgttctacgagtgga |
41572544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 27753710 - 27753956
Alignment:
| Q |
22 |
tggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacgccgt |
121 |
Q |
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| T |
27753710 |
tggagcttccgatcaatttgtttctgctgtgggaggattggaatgtggcagcagggagtaataagatccgtaagggattccggttgatttggcacgccgt |
27753809 |
T |
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| Q |
122 |
agtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtc-ggtggagggtacggtggaggctgtgaaggttatatcgaggaga |
220 |
Q |
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| T |
27753810 |
agtgtggaatttatggagggtgagaaatgaccgaattttcaaaaatgcggtttatcgggtggaggatacggtggaggctgtgaaggttatgtcgtggaga |
27753909 |
T |
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| Q |
221 |
tgtattctttgccgtttgaaggtgccggcgtgtttgttctacgagtg |
267 |
Q |
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| T |
27753910 |
tggtttcttagccgtttgaaggtgccggcgtgtttgttctacgagtg |
27753956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 10909566 - 10909508
Alignment:
| Q |
105 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
163 |
Q |
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| T |
10909566 |
ttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaa |
10909508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 21942311 - 21942062
Alignment:
| Q |
20 |
tatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacgcc |
119 |
Q |
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| T |
21942311 |
tatggagcttctgttaaatttgtttgtgctgtgggaggtctggaatgtggcagcgggtaataatgggattcgcaagggcttccggttggtttggcatgcc |
21942212 |
T |
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| Q |
120 |
gtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgt-cggtggagggtacggtggaggctgtgaaggttatatcgagga |
218 |
Q |
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| T |
21942211 |
gtcgtgtgaaatctttggagggtgagaaatgatcttattttcaaaaatgcagtttgtggggtgaaggatacggtggaggcagtgaaggtaatgtcgtgga |
21942112 |
T |
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| Q |
219 |
gatgtattctt-tgccgtttgaaggtgccggcgtgtttgttctacgagtgg |
268 |
Q |
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| T |
21942111 |
gatg-gttcttgagccgtttaaagatgccgacgtgtttgttctacgagtgg |
21942062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 13725863 - 13725921
Alignment:
| Q |
105 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
163 |
Q |
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| T |
13725863 |
ttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaa |
13725921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 26728806 - 26728864
Alignment:
| Q |
102 |
cgtttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaatttt |
160 |
Q |
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| T |
26728806 |
cgtttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttt |
26728864 |
T |
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