View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1550_low_1 (Length: 533)

Name: NF1550_low_1
Description: NF1550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1550_low_1
NF1550_low_1
[»] chr5 (1 HSPs)
chr5 (52-168)||(14911567-14911682)
[»] chr6 (3 HSPs)
chr6 (433-513)||(32872204-32872285)
chr6 (163-231)||(32870825-32870897)
chr6 (1-49)||(32870772-32870820)
[»] chr7 (3 HSPs)
chr7 (48-138)||(42434013-42434098)
chr7 (241-286)||(35778684-35778729)
chr7 (243-283)||(31929807-31929847)
[»] chr1 (2 HSPs)
chr1 (243-286)||(44938520-44938563)
chr1 (243-283)||(39125766-39125806)
[»] chr8 (2 HSPs)
chr8 (243-287)||(24245157-24245201)
chr8 (243-283)||(12339885-12339925)
[»] scaffold0010 (1 HSPs)
scaffold0010 (243-286)||(153477-153520)
[»] chr2 (1 HSPs)
chr2 (237-269)||(1198683-1198715)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 14911567 - 14911682
Alignment:
Q  52 aaaatgctcaattgcacgactaaaaccatcgtgtgtatcccgcgaatgtgctggcaactgaggtccccactctttttcatacaaaatgctgaaattaacc 151  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||  |||||||||     
T  14911567 aaaatgctcaattgcacgacaaaaatcatcgtgtgtatcccgcgaatgcgttggcaactgaggtcctcactc-ttttcatacaaaatgtcgaaattaact 14911665  T
Q  152 ttggacttgttttgtcc 168  Q
    || ||||||| ||||||    
T  14911666 ttagacttgtgttgtcc 14911682  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 32872204 - 32872285
Alignment:
Q  433 caattttttaattttgagttcatgctatacacctatatccttctatatttgagcat-ttttgagtctaaaaatcatacatac 513  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  32872204 caatttttttattttgagttcatgctatacacctatatccttctatatttgagcatattttaagtctaaaaatcatatatac 32872285  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 32870825 - 32870897
Alignment:
Q  163 ttgtccttatctccgaaaatttttgttctccgtttatttgta----gtttattactccgtttcaaaatgaata 231  Q
    ||||||| |||||| |||| |||||||||| |||||||||||    ||||||| ||| |||||||||||||||    
T  32870825 ttgtcctgatctccaaaaacttttgttctctgtttatttgtactccgtttatttctctgtttcaaaatgaata 32870897  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32870772 - 32870820
Alignment:
Q  1 tcgtttaccccacctgttcattttcaaccgtcgttcctcttttcaaaaa 49  Q
    |||||||||| ||||||| ||||||||| ||| ||| ||||||||||||    
T  32870772 tcgtttaccctacctgtttattttcaactgtcattcttcttttcaaaaa 32870820  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 42434013 - 42434098
Alignment:
Q  48 aaggaaaatgctcaattgcacgactaaaaccatcgtgtgtatcccgcgaatgtgctggcaactgaggtccccactctttttcatacaaaat 138  Q
    |||| |||||||||||||  |||| |||||||||||| ||     ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  42434013 aagggaaatgctcaattgtgcgacaaaaaccatcgtgcgt-----gcgaatgcgctggcaactgaggtccccactctttttcatgcaaaat 42434098  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 35778729 - 35778684
Alignment:
Q  241 ttgtttaagatttttacacatatattaagtaatgcaatgattagaa 286  Q
    ||||||||| ||||||||||||| ||||| |||||| |||||||||    
T  35778729 ttgtttaaggtttttacacatatgttaagaaatgcattgattagaa 35778684  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 31929807 - 31929847
Alignment:
Q  243 gtttaagatttttacacatatattaagtaatgcaatgatta 283  Q
    |||| |||| ||||||||||||||||| |||||||||||||    
T  31929807 gttttagatgtttacacatatattaagaaatgcaatgatta 31929847  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 44938520 - 44938563
Alignment:
Q  243 gtttaagatttttacacatatattaagtaatgcaatgattagaa 286  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  44938520 gtttaagatttttacacacatattaagaaatgcaatgattagaa 44938563  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 39125806 - 39125766
Alignment:
Q  243 gtttaagatttttacacatatattaagtaatgcaatgatta 283  Q
    ||||||| |||||||||| |||||||| |||||||||||||    
T  39125806 gtttaaggtttttacacacatattaagaaatgcaatgatta 39125766  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 24245157 - 24245201
Alignment:
Q  243 gtttaagatttttacacatatattaagtaatgcaatgattagaaa 287  Q
    |||||||||||||||||| |||||||| ||| |||||||||||||    
T  24245157 gtttaagatttttacacacatattaagaaatccaatgattagaaa 24245201  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 12339925 - 12339885
Alignment:
Q  243 gtttaagatttttacacatatattaagtaatgcaatgatta 283  Q
    ||||||| |||||||||| |||||||| |||||||||||||    
T  12339925 gtttaaggtttttacacacatattaagaaatgcaatgatta 12339885  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 153520 - 153477
Alignment:
Q  243 gtttaagatttttacacatatattaagtaatgcaatgattagaa 286  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||    
T  153520 gtttaaggtttttacacatatattaagaaatgcaatgactagaa 153477  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 1198683 - 1198715
Alignment:
Q  237 aatattgtttaagatttttacacatatattaag 269  Q
    |||||||||||||||||||||||||| ||||||    
T  1198683 aatattgtttaagatttttacacataaattaag 1198715  T

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