View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1550_low_10 (Length: 253)
Name: NF1550_low_10
Description: NF1550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1550_low_10 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 86 - 253
Target Start/End: Original strand, 41572399 - 41572566
Alignment:
| Q |
86 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
185 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41572399 |
taataaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacagcataccccagcctcaaacttgtttactgctaaaaccgct |
41572498 |
T |
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| Q |
186 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgcc |
253 |
Q |
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| T |
41572499 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgcc |
41572566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 27754102 - 27753936
Alignment:
| Q |
86 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
27754102 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacgggtcaccgcaatataaacagcataccccagcctcaaacttgtt-actgctaaaaccgct |
27754004 |
T |
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| Q |
186 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacgcc |
253 |
Q |
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| T |
27754003 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaacttcactcgtagaacaaacacgcc |
27753936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 251
Target Start/End: Original strand, 21941917 - 21942081
Alignment:
| Q |
87 |
aatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatata-cacaggataccccagcctcaaacttgtttactgctaaaaccgct |
185 |
Q |
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|||||||||||||||| | | ||||||||| |||||||| ||||||||||| || ||| | ||||||||||||||| ||||| |||| ||||| || |
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| T |
21941917 |
aatgaggctgccatataccatcctgcacaaa-ccagcacatgtcaccgcaatttaacacggcataccccagcctcaatcttgtag-ctgcgaaaactgca |
21942014 |
T |
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| Q |
186 |
gaacacctcctca-ttaccgtaagaggcacgcttttggattccaactccactcgtagaacaaacacg |
251 |
Q |
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|| | | | || |||| ||||||| || |||||||||||||||| |||||||||||||||||||| |
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| T |
21942015 |
gagaaacccgtccgttactgtaagagacatgcttttggattccaacaccactcgtagaacaaacacg |
21942081 |
T |
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