View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1550_low_2 (Length: 517)
Name: NF1550_low_2
Description: NF1550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1550_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 12819285 - 12819154
Alignment:
| Q |
27 |
ttgctttcaccaacttttgttttcaagaaaatagtgcagaaaatatggtctatatctatatactaaaagaaaatctctctttgaatgttttcccactctc |
126 |
Q |
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| T |
12819285 |
ttgctttcaccaacttttgttttcaagaaaatagtgcagaaaatatggtctatatctatatactataagaaaatctctctttgaatgttttcccactctc |
12819186 |
T |
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| Q |
127 |
gattttattgggtgtcttatatatttttaaca |
158 |
Q |
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| T |
12819185 |
gatttcattgggtgtcttatatatttttaaca |
12819154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 12819138 - 12819029
Alignment:
| Q |
191 |
tttgcaagaatctagggacttctttaccataattacttaattattatatatacatagcttctgttgtgtgtaatcacttgactcagtcattttcgtgctt |
290 |
Q |
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| T |
12819138 |
tttgcaagaatctagggacttctttaccataattacttaattattatatatacatagcttcagttgtgtgtaatcacttgactcagtcattttcgtgctt |
12819039 |
T |
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| Q |
291 |
cttcaactac |
300 |
Q |
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| T |
12819038 |
cttcaactac |
12819029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 369 - 509
Target Start/End: Complemental strand, 12818959 - 12818813
Alignment:
| Q |
369 |
aaatcacttcttctatggttgccttgaactcagctgcctacatattgtcacgaagctttttgcgttcgtcaaatttcggaatggaaaccaaaaacttata |
468 |
Q |
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| T |
12818959 |
aaatcacttcttctatggttgccttgaactcagctgcctatatattgtcacgaagcttttttcgtttgtcaaatttcgcaatgaaaaccataaacttata |
12818860 |
T |
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| Q |
469 |
tgtat------aatatggctgccttttctctaaaatcatttcttctc |
509 |
Q |
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| T |
12818859 |
tgtatgatatacatatggctgccttttctctaaaatcatttcttctc |
12818813 |
T |
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