View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1550_low_3 (Length: 492)
Name: NF1550_low_3
Description: NF1550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1550_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 49 - 492
Target Start/End: Complemental strand, 2064923 - 2064480
Alignment:
| Q |
49 |
gtaatccatctccaacaaccaccgaacctcctcctcacactcacagccgtcgtatctctccagaaacaacacctccctccgtcatcgactcactccctct |
148 |
Q |
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| T |
2064923 |
gtaatccatctccaacaaccaccgaacctcctcctcacactcacagccgtcgtatctctccagaaacaacacctccctccgtcatcgactcactccctct |
2064824 |
T |
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| Q |
149 |
cttcacattctcatccatctcccgtcgttcctccgccgtcaccgccgctgattgcgctgtctgtttatcaaagttccgtaactccgacctcctccgttct |
248 |
Q |
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| T |
2064823 |
cttcacattctcatccatctcccgtcgttcctccgccgtcaccgccgctgactgcgctgtctgtttatcaaagttccgtaactccgacctcctccgttct |
2064724 |
T |
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| Q |
249 |
cttcctctctgttgccacgctttccatgctgaatgcattgacacatggctccgttcaaatctttcatgtccgttatgtcgctccagcattctcccttccg |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2064723 |
cttcctctctgttgccacgctttccatgctgaatgcattgacacatggctccgttcaaatctttcatgtccgttatgtcgcgccagcattctcccttccg |
2064624 |
T |
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| Q |
349 |
attctgatctcgcgaaaattctccgatcaacttcttcagacagtttccgagttgatatcggaaatataagccgccgtggaaacaatcttcccaatcccga |
448 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064623 |
attctgatctcgcaaaaattctccgatcaacttcttcagacagtttccgagttgatatcggaaatataagccgccgtggaaacaatcttcccaatcccga |
2064524 |
T |
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| Q |
449 |
cgccgttactaccggtggcgattcaaggtcttattcaattggat |
492 |
Q |
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| T |
2064523 |
cgccgttactaccggtggcgattcaaggtcttattcgattggat |
2064480 |
T |
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