View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1550_low_4 (Length: 387)

Name: NF1550_low_4
Description: NF1550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1550_low_4
NF1550_low_4
[»] chr7 (35 HSPs)
chr7 (18-268)||(21689808-21690058)
chr7 (156-371)||(21792282-21792497)
chr7 (91-371)||(21788500-21788801)
chr7 (164-371)||(21992453-21992681)
chr7 (91-265)||(21714581-21714758)
chr7 (91-265)||(21772359-21772536)
chr7 (161-265)||(21628526-21628630)
chr7 (154-265)||(21682048-21682159)
chr7 (154-265)||(21785804-21785915)
chr7 (95-265)||(21664505-21664675)
chr7 (156-265)||(21726294-21726403)
chr7 (173-265)||(15714015-15714107)
chr7 (173-265)||(21623591-21623683)
chr7 (172-265)||(21745924-21746017)
chr7 (164-265)||(21764442-21764540)
chr7 (181-371)||(21652340-21652542)
chr7 (155-255)||(21807802-21807902)
chr7 (164-255)||(21705045-21705136)
chr7 (301-372)||(15713893-15713964)
chr7 (154-265)||(21647145-21647256)
chr7 (298-367)||(21726171-21726240)
chr7 (298-371)||(21785677-21785750)
chr7 (299-371)||(21714454-21714526)
chr7 (299-371)||(21807970-21808042)
chr7 (164-219)||(21656895-21656950)
chr7 (269-366)||(21681926-21682023)
chr7 (298-367)||(21772236-21772305)
chr7 (301-371)||(21623464-21623534)
chr7 (298-364)||(21628403-21628469)
chr7 (301-364)||(21745810-21745873)
chr7 (301-371)||(21664372-21664442)
chr7 (298-366)||(21764338-21764406)
chr7 (301-356)||(21704929-21704984)
chr7 (298-359)||(21689696-21689757)
chr7 (298-367)||(21647018-21647091)
[»] scaffold0182 (2 HSPs)
scaffold0182 (156-265)||(25771-25880)
scaffold0182 (297-371)||(25644-25718)
[»] chr1 (1 HSPs)
chr1 (304-359)||(18192049-18192104)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 21690058 - 21689808
Alignment:
Q  18 cgaatgtgattcatttggtattgatacattgtgttgtccttcttcgtcatcctccttcgctaactgtgactcatttggaaccacgtctttctccttctct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21690058 cgaatgtgattcatttggtattgatacattgtgttgtccttcttcgtcatcctccttctctaactgtgactcatttggaaccacgtctttctccttctct 21689959  T
Q  118 ggctgtgacttacctggtctggcccagagacactcaaggaaattcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagta 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  21689958 ggctgtgacttacctggtctggcccagagacactcgaggaaattcgtcgtgctttttatcaattcactcttgttgttatctttccacaatagctcgagta 21689859  T
Q  218 cttcataaggcagttgattctccaacaaaagcacatccatcatcacaatag 268  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||||||    
T  21689858 cttcataaggaagttgattctctaacaaaagcacatccaccatcacaatag 21689808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 156 - 371
Target Start/End: Complemental strand, 21792497 - 21792282
Alignment:
Q  156 gaaattcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatcc 255  Q
    ||||||||||||||||| ||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21792497 gaaattcgtcatgctttctattaatgcactctggttgtcgtctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatcc 21792398  T
Q  256 atcatcacaatagtcatgtgccctggttcaaaatgcttccaattctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagctttt 355  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21792397 atcatcacaatagtcatgtgctcttgttcaaaatgcttccatttctccaagatatgcaacaaagaacatccatccacgaacaatatccatgacagctttt 21792298  T
Q  356 cttcgaggctaccaaa 371  Q
    ||||||||||||||||    
T  21792297 cttcgaggctaccaaa 21792282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 91 - 371
Target Start/End: Complemental strand, 21788801 - 21788500
Alignment:
Q  91 tttggaaccacgtctttctccttctctggctgtgacttacctggtctggccca--ga-gacactcaaggaaattcgtcatgctttttatcaattcactct 187  Q
    |||||||||| ||| |||||||| ||||||||||||| | ||||| |||||||  || |||| || |||||| || |||||||||||||||||||||| |    
T  21788801 tttggaaccatgtccttctccttatctggctgtgactcatctggtgtggcccaatgatgacagtcgaggaaagtcatcatgctttttatcaattcactat 21788702  T
Q  188 cgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcaca---------------------at 266  Q
    ||||   ||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||                     ||    
T  21788701 cgtt---atctttccacaatagcttgagtactacgtaaggaagttgattctccaacagaagcacatccatcatcacaagaaccagttgatcaactttaat 21788605  T
Q  267 agtcatgtgccctggttcaaaatgcttccaattctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggcta 366  Q
    | |||||||||| ||||||  | ||||    ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  21788604 attcatgtgcccaggttcatcaagcttggctttctctaagatatacaacaaagaacatccatccacgaacaacatccacgacagcttttcttcgaggctt 21788505  T
Q  367 ccaaa 371  Q
    |||||    
T  21788504 ccaaa 21788500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 164 - 371
Target Start/End: Complemental strand, 21992681 - 21992453
Alignment:
Q  164 tcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcac 263  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||    
T  21992681 tcatgctttttatcaattcactctcattgttatctttccacaatagcttgagtactacgtaaggaagttgattctccaacagaagcacatccatcatcac 21992582  T
Q  264 a---------------------atagtcatgtgccctggttcaaaatgcttccaattctccaagatatgcaacaaagaacatccatccacgaacaacatc 342  Q
    |                     ||| |||||||||| ||||||  | ||||    ||||| ||||||| |||||||||||||||||||||||||||||||    
T  21992581 aagaaccagttgatcaactttaatattcatgtgcccaggttcatcaagcttggctttctctaagatatacaacaaagaacatccatccacgaacaacatc 21992482  T
Q  343 catgacagcttttcttcgaggctaccaaa 371  Q
    ||||||||||||||||||||||| |||||    
T  21992481 catgacagcttttcttcgaggcttccaaa 21992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 265
Target Start/End: Complemental strand, 21714758 - 21714581
Alignment:
Q  91 tttggaaccacgtctttctccttctctggctgtgacttacctggtctggccca--ga-gacactcaaggaaattcgtcatgctttttatcaattcactct 187  Q
    |||||||||| ||| |||| |||||||| |||||||| | ||||| |||||||  || ||||  | ||||||||| ||||||||||||||||| ||||||    
T  21714758 tttggaaccatgtccttcttcttctctgactgtgactcatctggtgtggcccaatgatgacaggcgaggaaattcatcatgctttttatcaatccactct 21714659  T
Q  188 cgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcacaa 265  Q
     ||  |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  21714658 ggtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcattacaa 21714581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 265
Target Start/End: Complemental strand, 21772536 - 21772359
Alignment:
Q  91 tttggaaccacgtctttctccttctctggctgtgacttacctggtctggccca--ga-gacactcaaggaaattcgtcatgctttttatcaattcactct 187  Q
    |||||||||| ||| |||| |||| ||| |||||||| | ||||| |||||||  || |||| || ||||||||| ||||||||| ||||||  ||||||    
T  21772536 tttggaaccatgtccttcttcttccctgactgtgactcatctggtgtggcccaatgatgacagtcgaggaaattcatcatgctttctatcaagccactct 21772437  T
Q  188 cgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcacaa 265  Q
    |||  |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  21772436 cgtcttcatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatccatcatcacaa 21772359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 21628630 - 21628526
Alignment:
Q  161 tcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcat 260  Q
    ||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21628630 tcgtcatgcattttatcaattcattctcattgttatctttccacaatagcttgagtacttcataaggaagttgattctccaacaaaagcacatccatcat 21628531  T
Q  261 cacaa 265  Q
    |||||    
T  21628530 cacaa 21628526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 21682159 - 21682048
Alignment:
Q  154 aggaaattcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacat 253  Q
    ||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  21682159 aggaaattcgtcataatttttatcaattcactctcattgctatctttccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacat 21682060  T
Q  254 ccatcatcacaa 265  Q
    ||||||||||||    
T  21682059 ccatcatcacaa 21682048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 21785915 - 21785804
Alignment:
Q  154 aggaaattcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacat 253  Q
    ||||||||| ||||||||||||||||||||||||||| |  ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  21785915 aggaaattcttcatgctttttatcaattcactctcgtcgctatctttccacaatagtttgaggacttcataaggaagttgattctccaacaaaagcacat 21785816  T
Q  254 ccatcatcacaa 265  Q
    ||||||||||||    
T  21785815 ccatcatcacaa 21785804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 95 - 265
Target Start/End: Complemental strand, 21664675 - 21664505
Alignment:
Q  95 gaaccacgtctttctccttctctggctgtgacttacctggtctggcccagagacactcaaggaaattcgtcatgctttttatcaattcactctcgttgtc 194  Q
    ||||||||| | |||||||||||| ||| |||| ||||||||| ||| | | | | |  | ||||||| | ||||||| ||||||| |||||| ||  ||    
T  21664675 gaaccacgtgtatctccttctctgactgcgactcacctggtcttgccaaaatatatttgaagaaattcatgatgctttctatcaatccactcttgtcttc 21664576  T
Q  195 atctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcacaa 265  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  21664575 atctttccacaatagcttgagtacttgataaggtagttgattctccaacaaaagcacatccatcatcacaa 21664505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 21726403 - 21726294
Alignment:
Q  156 gaaattcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatcc 255  Q
    ||||||| ||||||||| ||||||| |||||||||  |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21726403 gaaattcatcatgctttctatcaatccactctcgtcttcatctgtccacaatagcttgagtacttgataaggaagttgattctccaacaaaagcacatcc 21726304  T
Q  256 atcatcacaa 265  Q
    ||||||||||    
T  21726303 atcatcacaa 21726294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 15714107 - 15714015
Alignment:
Q  173 ttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcacaa 265  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  15714107 ttatcaactcactctcgttgttatctttccacaatagcttgagtacttcataaggaagttgattctccaacaaaagcacatccattatcacaa 15714015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 21623683 - 21623591
Alignment:
Q  173 ttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcacaa 265  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  21623683 ttatcaattcattctcgttgttatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaaccacatcaatcatcacaa 21623591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 21746017 - 21745924
Alignment:
Q  172 tttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcacaa 265  Q
    |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  21746017 tttatcaattcactctcgttgttatcttttcacaatagctagagtacttcataaggcagttgattctccaacaaaagtacatcgatcatcacaa 21745924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 21764540 - 21764442
Alignment:
Q  164 tcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatcac 263  Q
    |||||| |||||||||||||||||||||   || |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  21764540 tcatgcattttatcaattcactctcgtt---atttttccacaatagcttgagtacttcgtaaggaagttgattctccaacaaaagcacatccatcatcac 21764444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 371
Target Start/End: Complemental strand, 21652542 - 21652340
Alignment:
Q  181 tcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatccatcatca------------caatag 268  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||             ||||     
T  21652542 tcactctcgttgtcgtctttccacaaaagcttgagtacttgataaggaagttgattttccaacaaaagcacatccatcatcagttgatcaaccttaatat 21652443  T
Q  269 tcatgtgccctggttcaaaatgcttccaattctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctacc 368  Q
    |||||||||||| ||||  |   ||    |||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||| |||||| |    
T  21652442 tcatgtgccctgcttcatcaacgttggctttctccaagatatgcagcaacgaacatccatccacgaacaacatccacgacaacttttcttcaaggctatc 21652343  T
Q  369 aaa 371  Q
    |||    
T  21652342 aaa 21652340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 21807802 - 21807902
Alignment:
Q  155 ggaaattcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatc 254  Q
    |||||||| ||||| ||||||||||||||| ||| |||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  21807802 ggaaattcctcatgatttttatcaattcaccctcattgttatcttcccacaatagcttaagtactttataaggcagttgattctccaacaaaagcacatc 21807901  T
Q  255 c 255  Q
    |    
T  21807902 c 21807902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 21705136 - 21705045
Alignment:
Q  164 tcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatcc 255  Q
    ||||||||||||| ||| ||||||| |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21705136 tcatgctttttattaatccactctcatcttcatctttccacaaaagcttgagtacttcataaggcagttgattctccaacaaaagcacatcc 21705045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 15713964 - 15713893
Alignment:
Q  301 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaat 372  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15713964 tccaagatatgcagcaaagagcatccatccacgaacaacatccatgacagcttttcttctaggctaccaaat 15713893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 21647256 - 21647145
Alignment:
Q  154 aggaaattcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacat 253  Q
    ||||||||  ||||| | |||||||||||| |||| |||| ||||||| | ||||| |||||||||   ||||| |||||||||||||||||||||||||    
T  21647256 aggaaatttttcatggtatttatcaattcattctcattgttatctttcaataatagtttgagtactatgtaagggagttgattctccaacaaaagcacat 21647157  T
Q  254 ccatcatcacaa 265  Q
    ||||||||||||    
T  21647156 ccatcatcacaa 21647145  T

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Target: chr7; HSP #21
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 21726240 - 21726171
Alignment:
Q  298 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctac 367  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  21726240 ttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctac 21726171  T

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Target: chr7; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 21785750 - 21785677
Alignment:
Q  298 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaa 371  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  21785750 ttctccaagatatgtagcaaagaacatccatccacaaacaacatccacgacagcttttcttcaaggctaccaaa 21785677  T

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Target: chr7; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 21714526 - 21714454
Alignment:
Q  299 tctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaa 371  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  21714526 tctccaagatatgaagcaaagaacatccatccacgaacaacatccacgatagcttttcttcaaggctaccaaa 21714454  T

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Target: chr7; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 21807970 - 21808042
Alignment:
Q  299 tctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaa 371  Q
    ||||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21807970 tctccaagatataaagcaaagagcatccatccacgaacaacatccatgacagcttttcttcaaggctaccaaa 21808042  T

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Target: chr7; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 21656950 - 21656895
Alignment:
Q  164 tcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtact 219  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21656950 tcatgctttttatcaattcactcttgttgtcatctttccacaatagcttgagtact 21656895  T

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Target: chr7; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 21682023 - 21681926
Alignment:
Q  269 tcatgtgccctggttcaaaatgcttccaattctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggcta 366  Q
    ||||||||||||||||| || || |    |||||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||| ||||||    
T  21682023 tcatgtgccctggttcataaagcatggttttctccaagatatgtagcaaagaacatccatccacgaacaacatccatgataacttttcttcaaggcta 21681926  T

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Target: chr7; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 21772305 - 21772236
Alignment:
Q  298 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctac 367  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  21772305 ttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctac 21772236  T

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Target: chr7; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 21623534 - 21623464
Alignment:
Q  301 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaa 371  Q
    |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||  | |||||||||    
T  21623534 tccatgatatgcagcaaagaacatccatccacgaacaacatccacgacagcttttctttaatgctaccaaa 21623464  T

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Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 21628469 - 21628403
Alignment:
Q  298 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggc 364  Q
    |||||||||||||  | |||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  21628469 ttctccaagatataaagcaaagagcatccatccacgaacaacatccacgacagcttttcttcaaggc 21628403  T

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Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 21745873 - 21745810
Alignment:
Q  301 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggc 364  Q
    ||||||||||| | ||||||||||||||| ||||| |||||||| |||||||||||||| ||||    
T  21745873 tccaagatatggagcaaagaacatccatctacgaataacatccacgacagcttttcttcaaggc 21745810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 21664442 - 21664372
Alignment:
Q  301 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaa 371  Q
    ||||||||||  | |||||| ||||||||||||||||| ||||| |||||||||||||| ||||| |||||    
T  21664442 tccaagatataaagcaaagagcatccatccacgaacaatatccacgacagcttttcttcaaggcttccaaa 21664372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 21764406 - 21764338
Alignment:
Q  298 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggcta 366  Q
    |||||||||| ||  | |||||| ||||||||||||||||||||||| |||| ||||||||| ||||||    
T  21764406 ttctccaagagataaagcaaagagcatccatccacgaacaacatccacgacaacttttcttcaaggcta 21764338  T

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Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 21704984 - 21704929
Alignment:
Q  301 tccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttc 356  Q
    ||||||||||| | ||||||||||||||||| |||||| ||||| |||||||||||    
T  21704984 tccaagatatggagcaaagaacatccatccatgaacaatatccacgacagcttttc 21704929  T

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Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 21689757 - 21689696
Alignment:
Q  298 ttctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttc 359  Q
    |||||||||||||  | |||||| ||||||||||| ||||||||||| || |||||||||||    
T  21689757 ttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttc 21689696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 21647091 - 21647018
Alignment:
Q  298 ttctccaagatatgcaacaaagaacatccat----ccacgaacaacatccatgacagcttttcttcgaggctac 367  Q
    ||||| |||||||||| ||||||||||||||    |||||||||| ||||| |||| ||||||||| |||||||    
T  21647091 ttctctaagatatgcagcaaagaacatccatatatccacgaacaatatccacgacaacttttcttcaaggctac 21647018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 25880 - 25771
Alignment:
Q  156 gaaattcgtcatgctttttatcaattcactctcgttgtcatctttccacaatagcttgagtacttcataaggcagttgattctccaacaaaagcacatcc 255  Q
    ||||| ||||||||||| ||||||||||||||| || || | |||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  25880 gaaatccgtcatgctttgtatcaattcactctcattctcgtttttccacaatagcttgagtacttcataaggaagttgattttccaacaaaaccacatcc 25781  T
Q  256 atcatcacaa 265  Q
    | ||||||||    
T  25780 accatcacaa 25771  T

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Target: scaffold0182; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 25718 - 25644
Alignment:
Q  297 attctccaagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggctaccaaa 371  Q
    ||||||||||||||| | |||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||    
T  25718 attctccaagatatgtagcaaagaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaa 25644  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 18192049 - 18192104
Alignment:
Q  304 aagatatgcaacaaagaacatccatccacgaacaacatccatgacagcttttcttc 359  Q
    |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  18192049 aagatacgcaacaaagaacatccatccacaaacaacatccatgatagcttttcttc 18192104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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