View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1550_low_5 (Length: 379)

Name: NF1550_low_5
Description: NF1550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1550_low_5
NF1550_low_5
[»] chr3 (8 HSPs)
chr3 (16-239)||(32836956-32837179)
chr3 (244-379)||(32836774-32836909)
chr3 (272-378)||(9176796-9176902)
chr3 (217-266)||(32826174-32826223)
chr3 (301-379)||(37341420-37341498)
chr3 (294-379)||(32847621-32847706)
chr3 (299-349)||(26749037-26749086)
chr3 (303-376)||(13826007-13826079)
[»] chr6 (3 HSPs)
chr6 (294-379)||(17930201-17930286)
chr6 (301-353)||(5107148-5107200)
chr6 (316-368)||(10788583-10788635)
[»] chr7 (5 HSPs)
chr7 (302-376)||(22519156-22519230)
chr7 (302-376)||(31457363-31457437)
chr7 (302-376)||(15954045-15954119)
chr7 (302-352)||(36298898-36298948)
chr7 (311-375)||(14753971-14754035)
[»] chr8 (2 HSPs)
chr8 (302-355)||(31006127-31006180)
chr8 (302-368)||(6870586-6870652)
[»] chr5 (1 HSPs)
chr5 (302-351)||(2209654-2209703)
[»] chr4 (4 HSPs)
chr4 (304-376)||(42555412-42555484)
chr4 (302-376)||(40714808-40714882)
chr4 (311-376)||(17120273-17120338)
chr4 (302-352)||(51357292-51357342)
[»] chr1 (1 HSPs)
chr1 (303-376)||(38264311-38264384)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 32837179 - 32836956
Alignment:
Q  16 cacaaacttagggaataataatcacaatctaacgtccttacaattnnnnnnngtcaagcgttcttaattggattaacctgtatacctcttccaacggaag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32837179 cacaaacttagggaataataatcacaatctaacgtccttacaattaaaaaaagtcaagcgttcttaattggattaacctgtatacctcttccaacggcag 32837080  T
Q  116 gttatatgatcggttctatgccaatggttttataccaagtctttgccaatacaaatgtacaatagacatttttgtaacaaaagttgatgtttgagttgga 215  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32837079 gttatatgatcgattctatgccaatggttttataccaagtctttgccaatacaaatgtacacaagacatttttgtaacaaaagttgatgtttgagttgga 32836980  T
Q  216 caaaacaattttttcaagactttg 239  Q
    ||||||||||||||||||||||||    
T  32836979 caaaacaattttttcaagactttg 32836956  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 244 - 379
Target Start/End: Complemental strand, 32836909 - 32836774
Alignment:
Q  244 gatctttgtttttgcgataaatttttagattacataaataatcttaccaacctcaaatttgttgaatcaagaagctttgcttttgttgaatatgataaac 343  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||    
T  32836909 gatctttgtttttgcgataaatttttaaattacataaataatcttaccaaccttaaatttgttgaatcaagaagctttacttttgttgaatatgatgaac 32836810  T
Q  344 tttatttatgctctttttcaatcaaggaactttgtt 379  Q
    |||||||||||| |||||||||||||||||||||||    
T  32836809 tttatttatgctttttttcaatcaaggaactttgtt 32836774  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 378
Target Start/End: Complemental strand, 9176902 - 9176796
Alignment:
Q  272 attacataaataatcttaccaacctcaaatttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaagga 371  Q
    |||||||||||||||||||||  ||||| ||| ||||||||||||| | || ||||||||||||||||  |||||||||||| | |  || ||||||| |    
T  9176902 attacataaataatcttaccactctcaatttttttgaatcaagaagatatgtttttgttgaatatgatggactttatttatgttttagttgaatcaagaa 9176803  T
Q  372 actttgt 378  Q
    |||||||    
T  9176802 actttgt 9176796  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 32826223 - 32826174
Alignment:
Q  217 aaaacaattttttcaagactttgaagggatctttgtttttgcgataaatt 266  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32826223 aaaacaattttttcaagactttgaagggatctttgtttttacgataaatt 32826174  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 37341420 - 37341498
Alignment:
Q  301 tttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaactttgtt 379  Q
    |||||||||||||| | ||||  ||||||| ||| |||||||||||||||||| | ||||| |||||||||||||||||    
T  37341420 tttgttgaatcaaggaactttatttttgttaaatgtgataaactttatttatgttttttttgaatcaaggaactttgtt 37341498  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 32847706 - 32847621
Alignment:
Q  294 cctcaaatttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaactttgtt 379  Q
    ||||||||||||||||| ||||| ||||| |||||| ||||||||| || |||||||||| | || || |||||| ||||||||||    
T  32847706 cctcaaatttgttgaattaagaaactttgtttttgtggaatatgatgaattttatttatgtttttgttgaatcaaagaactttgtt 32847621  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 26749086 - 26749037
Alignment:
Q  299 aatttgttgaatcaagaagctttgcttttgttgaatatgataaactttatt 349  Q
    ||||||||||||||||||| |||  |||||| |||||||||||||||||||    
T  26749086 aatttgttgaatcaagaagtttta-ttttgtcgaatatgataaactttatt 26749037  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 13826079 - 13826007
Alignment:
Q  303 tgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaacttt 376  Q
    ||||||| ||||| |||||| |||||||||||||||| ||||||| ||||||| || || ||| || |||||||    
T  13826079 tgttgaagcaaga-gctttgtttttgttgaatatgatgaactttacttatgcttttgttaaattaaagaacttt 13826007  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 294 - 379
Target Start/End: Original strand, 17930201 - 17930286
Alignment:
Q  294 cctcaaatttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaactttgtt 379  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| | || || |||||| ||||||||||    
T  17930201 cctcaaatttcttgaatcaagaagctttgtttttgttgaatatgatgaactttatttatgtttttgttgaatcaaagaactttgtt 17930286  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 5107200 - 5107148
Alignment:
Q  301 tttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatg 353  Q
    |||||||||||||| | ||||| ||||||| |||||||| ||||| |||||||    
T  5107200 tttgttgaatcaaggaactttgtttttgttaaatatgatgaacttgatttatg 5107148  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 10788635 - 10788583
Alignment:
Q  316 agctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaa 368  Q
    ||||||| |||||||||||||||| ||||||| ||||||| || || ||||||    
T  10788635 agctttgtttttgttgaatatgatgaactttacttatgcttttgttaaatcaa 10788583  T

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Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 22519156 - 22519230
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaacttt 376  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||||||| || || |||||| |||||||    
T  22519156 ttgttgaaacaagaaactttgtttttgttgaatatgataaactttatttatgcttttgttaaatcaaagaacttt 22519230  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 376
Target Start/End: Complemental strand, 31457437 - 31457363
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaacttt 376  Q
    |||||||| ||||||| |||| |||||||||||||||| |||||||||||| || || || |||||| |||||||    
T  31457437 ttgttgaagcaagaagttttgtttttgttgaatatgatgaactttatttatacttttgttaaatcaaagaacttt 31457363  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 15954045 - 15954119
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaacttt 376  Q
    |||||||| ||||||| |||  |||||||| ||||||| | ||||||||||||| || || |||||| |||||||    
T  15954045 ttgttgaagcaagaagttttatttttgttggatatgatcagctttatttatgcttttgttaaatcaatgaacttt 15954119  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 36298948 - 36298898
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttat 352  Q
    |||||||| ||| |||||||| |||||||||||||||| | ||||||||||    
T  36298948 ttgttgaagcaataagctttgtttttgttgaatatgatgagctttatttat 36298898  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 14753971 - 14754035
Alignment:
Q  311 caagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaactt 375  Q
    |||||| ||||| ||||||| |||||||| ||||||||||||| |  | || |||||||||||||    
T  14753971 caagaaactttgtttttgttaaatatgatgaactttatttatgtttgtgttaaatcaaggaactt 14754035  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 31006180 - 31006127
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgct 355  Q
    |||||||| |||||| ||||| |||||||||||||||||| |||||||||||||    
T  31006180 ttgttgaagcaagaaactttgtttttgttgaatatgataatctttatttatgct 31006127  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 368
Target Start/End: Original strand, 6870586 - 6870652
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaa 368  Q
    ||||| || ||||||| |||| |||||||||||||||| | ||||||||||||| || || ||||||    
T  6870586 ttgttaaagcaagaagttttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaa 6870652  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 2209703 - 2209654
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttattta 351  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  2209703 ttgttgaagcaagaagctttgtttttgttgaatatgataagctttattta 2209654  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 42555484 - 42555412
Alignment:
Q  304 gttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaacttt 376  Q
    |||||| ||| |||||||| |||||||||||||||||| ||||||||||||| || || ||| || |||||||    
T  42555484 gttgaagcaataagctttgtttttgttgaatatgataacctttatttatgcttttgttaaattaaagaacttt 42555412  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 40714808 - 40714882
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaacttt 376  Q
    |||||||| |||||||||||| |||||||||||||||| | ||||||| ||| | || || |||||| |||||||    
T  40714808 ttgttgaagcaagaagctttgtttttgttgaatatgatgagctttattaatgtttttgttaaatcaaagaacttt 40714882  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 17120273 - 17120338
Alignment:
Q  311 caagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaacttt 376  Q
    |||||| ||||| |||||||||||||||| | ||||||||||||| || || |||||| |||||||    
T  17120273 caagaaactttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaaagaacttt 17120338  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 51357342 - 51357292
Alignment:
Q  302 ttgttgaatcaagaagctttgcttttgttgaatatgataaactttatttat 352  Q
    |||||||| ||| |||||||| |||||||||||||||| | ||||||||||    
T  51357342 ttgttgaaacaataagctttgtttttgttgaatatgatgagctttatttat 51357292  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 38264311 - 38264384
Alignment:
Q  303 tgttgaatcaagaagctttgcttttgttgaatatgataaactttatttatgctctttttcaatcaaggaacttt 376  Q
    ||||||| |||||| ||||| |||  ||||||||||||| ||||||||||||| || |  |||||| |||||||    
T  38264311 tgttgaagcaagaaactttgttttaattgaatatgataatctttatttatgcttttgtcaaatcaaagaacttt 38264384  T

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