View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15511_high_2 (Length: 423)
Name: NF15511_high_2
Description: NF15511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15511_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 49351852 - 49351455
Alignment:
| Q |
1 |
atcatgttcccttcctatcacatcagaaccaatcacatatgaatgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351852 |
atcatgttcccttcctatcacatcagaatcaatcacatatgaatgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggcca |
49351753 |
T |
|
| Q |
101 |
aacttaagcctatcagcagcaaccttatcaaatctctctttgatgtgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgaga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49351752 |
aacttaagcctatcagcagcaaccttatcaaatctctctttgatatgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgaga |
49351653 |
T |
|
| Q |
201 |
agaaacattttaccttccttctgatgctacctgaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgta |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351652 |
agaaacattttaccttccttctgatgctacctgaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgta |
49351553 |
T |
|
| Q |
301 |
gaagacacgcttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacag |
398 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49351552 |
gaagacgcgcttaatctgtttcaaccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacag |
49351455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 49340488 - 49340092
Alignment:
| Q |
1 |
atcatgttcccttcctatcacatcagaaccaatcacatatgaatgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggcca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49340488 |
atcatgttttcttcctatcacatcagaatcaatcacatatgaatgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggcca |
49340389 |
T |
|
| Q |
101 |
aacttaagcctatcagcagcaaccttatcaaatctctctttgatgtgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgaga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49340388 |
aacttaagcctatcagcagcaaacttatcaaatctttctttgatatgtttgatttgatgtgccatttgaaagcgataaacaagaggattagaatttgaga |
49340289 |
T |
|
| Q |
201 |
agaaacattttaccttccttctgatgctacctgaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49340288 |
agaaacattttaccttccttctgatgctaccagaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgta |
49340189 |
T |
|
| Q |
301 |
gaagacacgcttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagaca |
397 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||| |
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| T |
49340188 |
gaaaacacggttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcatctaataacacggctttgacgagtgagaca |
49340092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 32784423 - 32784820
Alignment:
| Q |
1 |
atcatgttcccttcctatcacatcagaaccaatcacatatgaatgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggcca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
32784423 |
atcatgttttcttcctatcacatcagaatcattcacatatgaatgtgtcaattcacgtctttttacaacacggttatcactatcattgatttgaaggcca |
32784522 |
T |
|
| Q |
101 |
aacttaagcctatcagcagcaaccttatcaaatctctctttgatgtgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| || ||| ||||||||||||||||||||||||| |
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|
| T |
32784523 |
aacttaagcctatcagcagcaaccttatcaaatctctctttgatatgtttgatttgatgcaccattttaaggcggtaaacaagaggattagaatttgaga |
32784622 |
T |
|
| Q |
201 |
agaaacattttaccttccttctgatgctacctgaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgta |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || |||||||| || |||||||||||||| || |
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|
| T |
32784623 |
agaaacgttttaccttccttctgatgctacctgaagtgttgatgatgtgctttcgcaaggcctcgcactcaaaatcatcgattacatcttcggcatcata |
32784722 |
T |
|
| Q |
301 |
gaagacacgcttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacag |
398 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32784723 |
gaagacccgcttaatctgtttcaaccattcacgcagctcatggttctgccattgcgtttgttcagcgtccaacaacacggctttgatgagtgagacag |
32784820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 44 - 398
Target Start/End: Original strand, 13441294 - 13441648
Alignment:
| Q |
44 |
tgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggccaaacttaagcctatcagcagcaaccttatcaaatctctctttga |
143 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||| |
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|
| T |
13441294 |
tgtgtcaattcacgcctttttacaacacggttatcactatcattgatttgaagaacaaacttatgtctatcagcagcaaccttatcaaatctttctttga |
13441393 |
T |
|
| Q |
144 |
tgtgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgagaagaaacattttaccttccttctgatgctacctgaagtgttgat |
243 |
Q |
| |
|
| ||||| ||||| |||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
13441394 |
tatgtttaatttgatgtgccattttaaggcgataaacaagaggattagaatccgagaagaaacattttactttccttctgatgctacctgaagtgttgat |
13441493 |
T |
|
| Q |
244 |
gacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgtagaagacacgcttaatctgtttcagccattcacgtagctcattg |
343 |
Q |
| |
|
|| |||||| | ||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |
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|
| T |
13441494 |
gatttgcttttgtaaggcttcacattcaaaatcatcgattacatcttcggcatcgtagaagacccgcttaatctgtttcagccattcacctagttcattg |
13441593 |
T |
|
| Q |
344 |
ttctgccattgcttttgttcagcgtccaacaacacggctttgacaagtgagacag |
398 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
13441594 |
ttctgccattgcctttgttcagcgtccaacaacactgctttgacgagtgagacag |
13441648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 29603048 - 29603379
Alignment:
| Q |
8 |
tcccttcctatcacatcagaaccaatcacatatgaatgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggccaaacttaa |
107 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||| ||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |
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|
| T |
29603048 |
tcccttcctatcacatcagaatcaactacatgcgaatgagtcaactcccgcctttttacaacatgattatcgctatcattgatttgaaggccaaaattat |
29603147 |
T |
|
| Q |
108 |
gcctatcagcagcaaccttatcaaatctctctttgatgtgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgagaagaaaca |
207 |
Q |
| |
|
||||| ||||||| ||||| ||||||| || || ||||||||||| |||||||||| || |||||||||||||||||||||| | || ||| ||| |
|
|
| T |
29603148 |
gcctagcagcagcgttcttattcaatctcttattaatatgtttgatttgatgtgccattttaaggcgataaacaagaggattagaactggataagtaacg |
29603247 |
T |
|
| Q |
208 |
ttttaccttccttctgatgctacctgaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgtagaagaca |
307 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||| |||||||||||||| ||||| || || ||||||| || |||||||| ||||||||||||||| |
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|
| T |
29603248 |
tcgtaccttccttctgatgctaccagaagtgttgactacgtgctttcgcaatgcctcgcactcaaaatcattgattacatcttctgcatcgtagaagaca |
29603347 |
T |
|
| Q |
308 |
cgcttaatctgtttcagccattcacgtagctc |
339 |
Q |
| |
|
|| || ||||||| |||||||||||| ||||| |
|
|
| T |
29603348 |
cgtttgatctgttgcagccattcacgaagctc |
29603379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 29750246 - 29749915
Alignment:
| Q |
8 |
tcccttcctatcacatcagaaccaatcacatatgaatgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggccaaacttaa |
107 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||| ||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
29750246 |
tcccttcctatcacatcagaatcaactacatgcgaatgagtcaactcccgcctttttacaacatgattatcgctatcattgatttgaaggccaaaattat |
29750147 |
T |
|
| Q |
108 |
gcctatcagcagcaaccttatcaaatctctctttgatgtgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgagaagaaaca |
207 |
Q |
| |
|
||||| ||||||| ||||| ||||||| || | ||||||||||| |||||||||| || |||||||||||||||||||||| | || ||| ||| |
|
|
| T |
29750146 |
gcctagcagcagcgttcttattcaatctcttattaacatgtttgatttgatgtgccattttaaggcgataaacaagaggattagaactggataagtaacg |
29750047 |
T |
|
| Q |
208 |
ttttaccttccttctgatgctacctgaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgtagaagaca |
307 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||| |||||||||||||| ||||| || || ||||||| || |||||||| ||||||||||||||| |
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|
| T |
29750046 |
tcgtaccttccttctgatgctaccagaagtgttgactacgtgctttcgcaatgcctcgcactcaaaatcattgattacatcttctgcatcgtagaagaca |
29749947 |
T |
|
| Q |
308 |
cgcttaatctgtttcagccattcacgtagctc |
339 |
Q |
| |
|
|| || ||||||| |||||||||||| ||||| |
|
|
| T |
29749946 |
cgtttgatctgttgcagccattcacgaagctc |
29749915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 386
Target Start/End: Complemental strand, 29743206 - 29742838
Alignment:
| Q |
11 |
cttcctatcacatcagaaccaatcacatatgaatgtgtcaattcgcgcctttttacaacacgattatcactatcattgatttgaaggccaaacttaagcc |
110 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||| ||||| || ||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||| |
|
|
| T |
29743206 |
cttcctatcacatcagaatcaattacatgcgaatgagtcaactcacgcctttttacaacatgattatcactatcattgattcgaaggccaaagttatgcc |
29743107 |
T |
|
| Q |
111 |
tatcagcagcaaccttatcaaatctctctttgatgtgtttgatttggtgtgccatttgaaagcgataaacaagaggattagaatttgagaagaaacattt |
210 |
Q |
| |
|
||||||||||||||||| ||| ||| || || ||||||||||| |||||||||| || ||||||||||||| ||||||| | |||||| | | || |
|
|
| T |
29743106 |
gatcagcagcaaccttattcaatttcttattaatatgtttgatttgatgtgccattttaaggcgataaacaagaaaattagaactggagaagtatcgttg |
29743007 |
T |
|
| Q |
211 |
taccttccttctgatgctacctgaagtgttgatgacgtgctttcgcaaggcctcacattcgaaatcatctataacatcttcggcatcgtagaagacacgc |
310 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| | |||||| ||||| |||||||| | |||||||| || |||||||| || |||| ||| |
|
|
| T |
29743006 |
taccttccttccgatgctaccagaagtgttgactatgtgcttccgcaatgcctcacactgaaaatcatcgattacatcttctgc-------aagatacgt |
29742914 |
T |
|
| Q |
311 |
ttaatctgtttcagccattcacgtagctcattgttctgccattgcttttgttcagcgtccaacaacacggctttga |
386 |
Q |
| |
|
|| ||||||| |||||||||||| ||||| | |||||| |||||| | ||||| ||||||| ||| ||||||| |
|
|
| T |
29742913 |
ttgatctgttgcagccattcacgaagctcgtgattctgcttctgctttagctcagcatccaacagcacagctttga |
29742838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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