View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15511_low_1 (Length: 520)
Name: NF15511_low_1
Description: NF15511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15511_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 110 - 520
Target Start/End: Complemental strand, 24927476 - 24927060
Alignment:
| Q |
110 |
acaagagttttttgttatcaggcttcttacaccacctgatacaccgctttttcctactttagacaaggagtcacaaatgccattgaagagtgaaacggag |
209 |
Q |
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| T |
24927476 |
acaagagtttttcgttatcaggcttcttacaccacctgatacaccactttttcctactttagacaaggagtcacaaatgccattgaagagtgaaacggag |
24927377 |
T |
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| Q |
210 |
actcgcagttctcgtccaactgctttaaagctaagggtaagaactatttaatacttcctctgtctcatattacatgtctcttaaggttacacacgcatag |
309 |
Q |
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| T |
24927376 |
actcacagttctcgtccaactgctttaaagctaagggtaagaactatttaatacttcctctgtctcatattacatgtcttttaaggttacacacgcatag |
24927277 |
T |
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| Q |
310 |
gaaaattatcgagtttactaatttctatgctaaaatgtgtttgtttcatttactaaagtaccctatcaatagcagttaggtgaattaagattcagttaat |
409 |
Q |
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| T |
24927276 |
gaaaattatcgagtttactaatttctatgctaaaatgtgtttgtttcatttactaaagtaccctatcaatagcagttaggtgaattaagattctgttaat |
24927177 |
T |
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| Q |
410 |
gagtttatatgcagcatagcaattttcctctttga------ttcttctaccttactcaaaaccttatactttcatttcttttatattccaactagtagta |
503 |
Q |
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| T |
24927176 |
gagtgtatatgcagcatagcaattttcctctttgaattaagatcttctaccttactcaaaaccttgtactttcatttcttttatattccaactagtagta |
24927077 |
T |
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| Q |
504 |
atgcattatgtgttttt |
520 |
Q |
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| T |
24927076 |
atgcattatgtgttttt |
24927060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 24928881 - 24928792
Alignment:
| Q |
20 |
aggaggagagagaaagagaatgaaaagaatgacattctacttcttcaaaactctgaggaacttgatttgtccaacttgggtatgtttttt |
109 |
Q |
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| T |
24928881 |
aggaggagagagaaagagaatgaaaagaatgaccttctacttcttcaaaactctgaggaacttgatttgtccaacttgggtatgtttttt |
24928792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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