View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15512_high_12 (Length: 234)
Name: NF15512_high_12
Description: NF15512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15512_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 29965305 - 29965104
Alignment:
| Q |
15 |
tgaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaaca |
114 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |
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| T |
29965305 |
tgaaccaaatggtatagattcaaattgctgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcgttttctaaccaaata |
29965206 |
T |
|
| Q |
115 |
tttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaa |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29965205 |
tttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaa |
29965106 |
T |
|
| Q |
215 |
gt |
216 |
Q |
| |
|
|| |
|
|
| T |
29965105 |
gt |
29965104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 30009493 - 30009694
Alignment:
| Q |
15 |
tgaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaaca |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |
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|
| T |
30009493 |
tgaaccaaatggtatagattcaaattgctgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcgttttctaaccaaata |
30009592 |
T |
|
| Q |
115 |
tttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009593 |
tttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaa |
30009692 |
T |
|
| Q |
215 |
gt |
216 |
Q |
| |
|
|| |
|
|
| T |
30009693 |
gt |
30009694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 29954036 - 29953840
Alignment:
| Q |
16 |
gaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacat |
115 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||| || | ||||||||||| ||||| || || ||||||||||||||||||| |
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| T |
29954036 |
gaaccaaatggtagagattcaaactcttgtccttgataattcattttcttgccaatgaatctctctgggtaaaattcttcggcattttctgaccaaacat |
29953937 |
T |
|
| Q |
116 |
ttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgagg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
29953936 |
ttgaatctctccctatagcccatgcatttactataactcgagtcttttcctttataaaatatccatcaattgttacactctctctacattcacgagg |
29953840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 30007584 - 30007388
Alignment:
| Q |
16 |
gaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacat |
115 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||| | |
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|
| T |
30007584 |
gaaccaaatggtatagattcaaactcatgtccttgataattcattttcttgtcaataaatctctctgggtaaaattcatcagcattttctgaccaaacgt |
30007485 |
T |
|
| Q |
116 |
ttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgagg |
212 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
30007484 |
tacaatctctcccaatagcccatgcatttactataactcgagtctttttcgttataaaatatccatcaattgttatgctctctctacattcacgagg |
30007388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 29947075 - 29946879
Alignment:
| Q |
16 |
gaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacat |
115 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||| ||||||||||||| | ||| ||||||| ||||||| ||| || ||| |||||||||||||||| |
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|
| T |
29947075 |
gaaccaaatggtatagatttaaacttatgtccttcataattcattttcatgtcaataaatctttctggatgaaattcttcataattttctgaccaaacac |
29946976 |
T |
|
| Q |
116 |
ttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgagg |
212 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
29946975 |
tagaatctctctctatagcccatgcatttactataactcgtgtcttttccattataaaatatccatcaattgttatactctctctacattcacgagg |
29946879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 30001468 - 30001272
Alignment:
| Q |
16 |
gaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacat |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| || ||| ||||||||||||| ||||| || |||||||||||||||||||||| |
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|
| T |
30001468 |
gaaccaaatggtatagattcaaactcttgtccgagataattcatttttttctcaataaatctctctgggtaaaattcttcagcattttctgaccaaacat |
30001369 |
T |
|
| Q |
116 |
ttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgagg |
212 |
Q |
| |
|
| ||||||||| || |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| | ||||||||||||||||| |
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| T |
30001368 |
caggatctctcccaattgcccatgcatttactataactcgtgtcttttcttttatagaataatcatcaattgttatgttctctctacattcacgagg |
30001272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 30043414 - 30043610
Alignment:
| Q |
16 |
gaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacat |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||| || || |||||||||||| ||||| || | |||||||||||||||||||| |
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|
| T |
30043414 |
gaaccaaatggtatagattcaaactcttgtccaagataattcatttttttctctacaaatctctctgggtaaaattctttagcattttctgaccaaacat |
30043513 |
T |
|
| Q |
116 |
ttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgagg |
212 |
Q |
| |
|
| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||| |
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|
| T |
30043514 |
taggatctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattgttgtgctctctctagattcacgagg |
30043610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 29995794 - 29995599
Alignment:
| Q |
16 |
gaaccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacat |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| ||| || ||| ||||||||||||||||||| || || ||||||||||||||||||| |
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|
| T |
29995794 |
gaaccaaatggtatagattcaaactcttgtccgagataattcagttt-ttctcaataaatctctctggataaaattcttcggcattttctgaccaaacat |
29995696 |
T |
|
| Q |
116 |
ttgaatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgagg |
212 |
Q |
| |
|
| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||| |||||| | |||||||| |
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|
| T |
29995695 |
taggatctctccctattgcccatgcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagg |
29995599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 29945100 - 29944907
Alignment:
| Q |
19 |
ccaaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttg |
118 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||||||| |||||||| | |||| ||||||||| |||| || ||||||||||||||||||||||| | |
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|
| T |
29945100 |
ccaaatggtatactttcaaactcttgtccttcataattcaatttcttattaataaacctctctggacaaaattcttcagcattttctgaccaaacattag |
29945001 |
T |
|
| Q |
119 |
aatctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgagg |
212 |
Q |
| |
|
||||||| |||| | ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||| |
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|
| T |
29945000 |
gatctctcgctattgtaaatgcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagg |
29944907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 30067935 - 30068120
Alignment:
| Q |
20 |
caaatggtatagattcaaattcttgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcattttctgaccaaacatttga |
119 |
Q |
| |
|
||||||||| | |||||| ||||||| |||||||||||||||||| ||| ||||||||| ||||||||| || ||||||||||||||||||||||| | |
|
|
| T |
30067935 |
caaatggtaaactttcaaactcttgtctttgataattcattttcttttcaataaatctctttggataaaattcttcagcattttctgaccaaacattagg |
30068034 |
T |
|
| Q |
120 |
atctctccctatagcccatgcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacatt |
205 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| || |||||||||||||||||||| |||||||||||||| | |||||||||| |
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|
| T |
30068035 |
atctctccctattgcccatgcatttaccataattctcgtcttttcctttataaaataatcatcaattgttatgttctctctacatt |
30068120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 163
Target Start/End: Complemental strand, 31890703 - 31890612
Alignment:
| Q |
72 |
aaatctctctggataaaactcatcagcattttctgaccaaacatttgaatctctccctatagcccatgcatttactataactcgtgtctttt |
163 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||| | ||||||||||| | ||||||||||| || || || |||||||| |
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|
| T |
31890703 |
aaatctctctggataaaacgtctcagcattatccgaccaaacattagtgtctctccctattgtccatgcatttattaaaattcttgtctttt |
31890612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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