View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15512_high_3 (Length: 404)
Name: NF15512_high_3
Description: NF15512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15512_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 26436755 - 26436363
Alignment:
| Q |
1 |
ttattaattctaccattttcttcaacagaaggatcaacaagatcccattagttcattacaattcaatnnnnnnnnn-tagtggatcttaaacagagatga |
99 |
Q |
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| T |
26436755 |
ttattaattctaccattttcttcaacagaaggatcaacaagatcccattagttcattacagttcaataaaaaaaaaatagtggatcttaaacagagatga |
26436656 |
T |
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| Q |
100 |
gagatagcaactttttaacaagatccccaaatctaagaacttgtaaacttaatactaacagctttggtgccctcggaatcaacatgtttagccaattctc |
199 |
Q |
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| T |
26436655 |
gagatagcaactttttaacaagatccccaaatctaagaacttgtaaacttaatactaacagctttcgtgccctcggaatcaacatgtttcgccaattctc |
26436556 |
T |
|
| Q |
200 |
ccagaagaacaagcctaaaatgtgtacagatctcttctaccacattcctacactagagttgggaattaggaattcaaaacagatggtacaacacctaaca |
299 |
Q |
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| T |
26436555 |
ccggaagaacaagcctaaaatgtgtacagatctcttctaccacattcctacactagagttgggaattaggaattcaaaacagatggtacaacacctaaca |
26436456 |
T |
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| Q |
300 |
gtgtatcgtgcccacgtcccttcatatcgaaaacccagattgacaaacatcaatgtggaggaaacaccaaaccaaatatacatttcatctcta |
392 |
Q |
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| T |
26436455 |
gtgcatcgtgcccacgtcccttcatatcgaaaacccagattgacaaacatcaatatggagtaaacaccaaaccaaatatacttttcatctcta |
26436363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 34662044 - 34662128
Alignment:
| Q |
130 |
atctaagaacttgtaaacttaatactaacagctttggtgccctcggaatcaacatgtttagccaattctcccagaagaacaagcctaa |
217 |
Q |
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| T |
34662044 |
atctaagaacttgtaaacttcgtt---acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaa |
34662128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 26436228 - 26436164
Alignment:
| Q |
3 |
attaattctaccattttcttcaacagaagg-atcaacaagatcccattagttcattacaattcaa |
66 |
Q |
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|||||||| ||||||||| | |||| |||| ||||||||||||| || |||||||||||| |||| |
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| T |
26436228 |
attaattccaccattttcattaacaaaagggatcaacaagatccaatcagttcattacaaatcaa |
26436164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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