View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15512_high_4 (Length: 374)
Name: NF15512_high_4
Description: NF15512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15512_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 4762990 - 4763351
Alignment:
| Q |
13 |
aatatcatgtgctgcatgaatatatcatgtaaaatgttaatattttttgttcaactaaaataaaattgttggatttctttgataacaggaagaaacatgc |
112 |
Q |
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| T |
4762990 |
aatatcatgtgctgcatgaaaatatcatgtaaaatgttaatattttttgttcaactaaaataaaattgttggatttctttgataacaggaagaaacatgc |
4763089 |
T |
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| Q |
113 |
atcagcaaggtggtatgtagaagttctccaattgttgtgtcaccgagaactaagcaaaatgacgagaaagacgattttctcctccccgagcacaatgact |
212 |
Q |
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| T |
4763090 |
atcagcaaggtggtatgtagaagttctccaattgttgtgtcaccgagaactaagaaaaatgacgagaaagacgattttctcctccccgagcacaatgact |
4763189 |
T |
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| Q |
213 |
ctccatcaacatatgcaagtcttgaaaaagatgcatatgagcaagagatcagaaaactgaagaacatggtcataatgcttcaagagagggaaagaagtct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4763190 |
ctccatcaacatatgcaagtcttgaaaaagatgcatatgagcaagagatcagaaaactgaagaacatggtcataatgcttcaagagagggaaagaagtct |
4763289 |
T |
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| Q |
313 |
cgaggttcaacttcttgaatattgtggtctaagagaacaagaaaccgttgtaatggagcttc |
374 |
Q |
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| T |
4763290 |
cgaggttcaacttcttgaatattgtggtctaagagaacaagaaaccgttgtaatggagcttc |
4763351 |
T |
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