View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15512_high_6 (Length: 302)
Name: NF15512_high_6
Description: NF15512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15512_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 4763337 - 4763618
Alignment:
| Q |
1 |
ttgtaatggagcttcaaaacaggttgaaaataagtaacatagaggcgaagatgtttaacctaaaggttgagacactacaatctgagaataggagattaga |
100 |
Q |
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| T |
4763337 |
ttgtaatggagcttcaaaacaggttgaaaataagtaacatagaggcaaagatgtttaacctaaaggttgagacactgcaatctgagaataggagattaga |
4763436 |
T |
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| Q |
101 |
ggcacaggttgctgggcatgcaaaagttttggcagaactcgaggcttcgaaaacaaaagttaaacttttgaagaagaaaattaagtatgaagccgaacag |
200 |
Q |
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| T |
4763437 |
ggcacaggttgctggtcatgcaaaagttttggcagaactcgaggcttcgaaaacaaaggttaaacttttgaagaagaaaattaagtatgaagccgaacag |
4763536 |
T |
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| Q |
201 |
aataaggagcatattataaatcttaaacaaaaggtttccaacttgcaagaccttgaatgcaaagctgttgctaaggatcaag |
282 |
Q |
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| T |
4763537 |
aataaggagcatattataaatcttaaacaaaaggtttccaagttgcaagaccttgaatgcaaagctgttgctaaggatcaag |
4763618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 12073204 - 12073250
Alignment:
| Q |
156 |
aaagttaaacttttgaagaagaaaattaagtatgaagccgaacagaa |
202 |
Q |
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| T |
12073204 |
aaagttaaattttttaagaagaaaattaagtatgaagctgaacagaa |
12073250 |
T |
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