View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15512_low_13 (Length: 274)
Name: NF15512_low_13
Description: NF15512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15512_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3010600 - 3010817
Alignment:
| Q |
1 |
ttgagacgataacaacacactccagccagcctcgctaatgagacacaaaaaacgcagcacaaataaacggtgtcagcagaacacac----accttgcaaa |
96 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| || |||||||| |||||||||||||| |||||||||| |
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| T |
3010600 |
ttgagacgataacgacacactccaaccagcctcgctaatgagacagaaaaaacgcagcaaaactaaacggtctcagcagaacacacgtacaccttgcaaa |
3010699 |
T |
|
| Q |
97 |
aacgaccagataaaaattgcagcaacacaacacccatcatcaactgactaagactgagcacgccccaacgataaccagataaccaataccccgcagaaca |
196 |
Q |
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||| |||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3010700 |
aacaaccaaataaaaattgcagcaacacaacacctctcatcagcggactaagactgagcacgccccaacgataaccagataaccaataccccgcagagca |
3010799 |
T |
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| Q |
197 |
gaaccaaacctaccgaaa |
214 |
Q |
| |
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|||||| |||||| |||| |
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| T |
3010800 |
gaaccagacctactgaaa |
3010817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 3002246 - 3002453
Alignment:
| Q |
29 |
gcctcgctaatgagacacaaaaaacgcagcacaaataaacggtgtcagcagaacacacaccttgcaaaaacgaccagataaaaattgcagcaacacaaca |
128 |
Q |
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|||||||||||||||| ||||||||||||| || |||| ||| |||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
3002246 |
gcctcgctaatgagaccgaaaaaacgcagcaaaactaaatggtctcagcaaaacacacaccttgaaaaaacaaccaaataaaaattgcagcaacacaaca |
3002345 |
T |
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| Q |
129 |
cccatcatcaactgactaagactgagcacgccccaacgataaccagataaccaataccccgcagaacagaaccaaacctaccgaaaaaaccaaccgctac |
228 |
Q |
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|| |||||| ||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||| ||||||| |||||| |||| |||||| ||||| |
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| T |
3002346 |
cctctcatcagctgactaaggctgagcacgccccgacgacaaccagaaaaccaataccccgcagagtagaaccagacctactgaaagtaccaacagctac |
3002445 |
T |
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| Q |
229 |
tgactatg |
236 |
Q |
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| |||||| |
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| T |
3002446 |
taactatg |
3002453 |
T |
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