View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15512_low_21 (Length: 212)
Name: NF15512_low_21
Description: NF15512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15512_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 2814895 - 2815077
Alignment:
| Q |
14 |
cagagagaaatatataaacagaaattaattataattgctgaaaatcacgaaatgcgtagaaaacacaaactgaga--agcaagagattggtacaatgcgg |
111 |
Q |
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| T |
2814895 |
cagaaagaaatatataaacagaaattaattataattgctgaaaatcacgaaatgcgtagaaaacacaaattgagagaagcaagagattggtacaatgcgg |
2814994 |
T |
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| Q |
112 |
tttggagaaggtggtgaatgagaaggtgaaaggcaaggtaggtagggttctgatatggtggtgaattgatctgacagtagaaa |
194 |
Q |
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| T |
2814995 |
tttggagacggtggtgaatgagaaggtgagaggcaaggtaggtagggttctgatatggtggtgaattgatctgacagtagaaa |
2815077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 47751905 - 47751792
Alignment:
| Q |
19 |
agaaatatataaacagaaattaattataattgctgaaaatcacgaaatgcgtagaaaacacaaact--gagaagcaagagattggtacaatgcggtttgg |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| | || ||| |||||||||| |
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| T |
47751905 |
agaaatatataaacagaaatcaattataattgctgaaaatcacgaaattggtagaaaacacaaattgagagaagcgagaaaatgatac-ctgcggtttgg |
47751807 |
T |
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| Q |
117 |
agaaggtggtgaatg |
131 |
Q |
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| T |
47751806 |
agacggtggtgaatg |
47751792 |
T |
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