View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15512_low_6 (Length: 410)
Name: NF15512_low_6
Description: NF15512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15512_low_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 14309406 - 14309801
Alignment:
| Q |
18 |
tgaatcccacgtatactccaccaaccata----gttgagcctttggcatgcctagtcatttaaaa-ctttcaaaaaagcaggcagataagttcacttttc |
112 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| | |
|
|
| T |
14309406 |
tgaatcccatgtatactccaccaaaaatatatagttgagcctttggcatgcctagtcatttaaaaactttcaaaaaatcaggcagataagttcattttgc |
14309505 |
T |
|
| Q |
113 |
cacaacaaaaataagagatctttgcgggaagagaacaatccaagtgtatgttatgattagtggctgcgagactaccaaatcatggtttggtgctgaagga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14309506 |
cacaacaaaaataagagatctttgcgggaagagaacaatccaagtgtatgttatgattagtggctgcgagactaccaaatcatggtttggtgctgaagga |
14309605 |
T |
|
| Q |
213 |
ggtatgagacttggtggagaaagagtccttttgctgccaaacccagttacacactgtattttgacagatttgtataatatacgaaggcggaatgagaaat |
312 |
Q |
| |
|
||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14309606 |
ggtatcagagttggtggagaaagagtctttttgctgccaaacccagttacacactgtattttgacagatttggataatatacgaaggcggaatgagaaat |
14309705 |
T |
|
| Q |
313 |
tacccatatcatattcatgatgaaccgtccgtcactatac---cagccctcatcaaacagagccatcactagttgtagcattcgttttcctcgagtgaag |
409 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14309706 |
tacc-----catattcacgatgaaccgtccgtcactctaccagcagccctcatcaaacagagccatcactagttgtagcattcgttttcctcgactgaag |
14309800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University