View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15512_low_8 (Length: 391)
Name: NF15512_low_8
Description: NF15512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15512_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 4808922 - 4809104
Alignment:
| Q |
1 |
tcagattcatgcatgtgtggatactaaccttaacaatcgtgtctatactctctagataaccaagtactcatactcctactactcgttactcacattttaa |
100 |
Q |
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| T |
4808922 |
tcagattcatacatgtgtggatactaaccttaacaattgtgtctatactctctagataactaagtactcatactcctactactcgttactcacattttaa |
4809021 |
T |
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| Q |
101 |
caaaaataaatcgataaataaacaaaatatcatgctattttaatacaattagaagagtattcaaagttcttcaagttgaattg |
183 |
Q |
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| T |
4809022 |
caaaaataaatcgataaataaacaaaatatcatactattttaatacaattagaagagtattcaaagttcttcaagttgaattg |
4809104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 248 - 375
Target Start/End: Original strand, 4809169 - 4809294
Alignment:
| Q |
248 |
taatcaaacatcaaaataataatttgataaacttacaggtcatttatcctccaaaatgtttgtaaaaagtatacatcacannnnnnnngttggacgggat |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4809169 |
taatcaaacatcaaaataataatttgataaacttacaggtcatttatcctccaaaatgtttgtaaaaagtatacatcacattttttt--ttggacgggat |
4809266 |
T |
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| Q |
348 |
ggatattaactaccaagttactcataat |
375 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
4809267 |
ggatattaactactaagttactcataat |
4809294 |
T |
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