View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_high_13 (Length: 302)
Name: NF15513_high_13
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_high_13 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 3745869 - 3745582
Alignment:
| Q |
14 |
aaagggaagcaaaaacatattcacttttaaacgaaacaatagaagaaatattcacttataaatgaaatnnnnnnnntgagaaagaaaggaagatcaaact |
113 |
Q |
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| T |
3745869 |
aaagggaagcaaaaacatattcacttttaaacgaaataatagaagaaatattcacttttaaatgaagtaaaaaaattgagaaagaaaagaagatcaaact |
3745770 |
T |
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| Q |
114 |
cattaatcttaatgcttaatatttgacgattaactataccaaatctcatataagtcaaaagaaactatagcaaaacttatactaaatcattccactattt |
213 |
Q |
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||| |||| ||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||| ||| | ||||| |
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| T |
3745769 |
cataaatcataatgctcaatatttgacgattaactatatcaaaactcatacgagtcaaaagaaactatagcaaaacttataataaattattttattattt |
3745670 |
T |
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| Q |
214 |
ttgttattccaactatataaatttcaaggaaataatttgaggataaaattacacagtaggagtattattttcatgaccaagttgcatat |
302 |
Q |
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| T |
3745669 |
ttgttattccaactacataaatttcaaggaga-catttgacgataaaattacatatcaagagtattattgtcatgaccaagttgcatat |
3745582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 4663311 - 4663021
Alignment:
| Q |
15 |
aagggaagcaaaaacatattcacttttaaacgaaacaatagaagaaatattcacttataaatgaaatnnnnnnnn--tgagaaagaaaggaagatcaaac |
112 |
Q |
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| T |
4663311 |
aagggaagcaaaaacatattcacttttaaacgaaaaaatagaagaagtattcacttttaaatgaagtaaacaaaaattgagaaagaaaagaagatcaaac |
4663212 |
T |
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| Q |
113 |
tcattaatcttaatgcttaatatttgacgattaactataccaaatctcatataagtcaaaagaaactatagcaaaacttatactaaatcattccactatt |
212 |
Q |
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| T |
4663211 |
tcataaatcgtaatgctcaatatttgacgattaactataccaaaactcatacgagtcaaaagaaactataacaaaacttataataaattattccattatt |
4663112 |
T |
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| Q |
213 |
tttgttattccaactatataaatttcaaggaaata-atttgaggataaaattacacagtaggagtattattttcatgaccaagttgcatat |
302 |
Q |
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| T |
4663111 |
tttgttattccaactatataaatttcaaggagacatagctgacgataaaattacacatcaagagtattattttcatgaccaagttgcatat |
4663021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 4747121 - 4746829
Alignment:
| Q |
16 |
agggaagcaaaaacatattcacttttaaacgaaacaatagaagaaatattcacttataaatgaaatnnnnnnnnt-gagaaagaaaggaagatcaaactc |
114 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| || |||||||| | | |||||||||| ||||||||||||| |
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| T |
4747121 |
aggggagcaaaaacatattcacttttaaaagaaacaatagaagaaatattcatttttaaatgaagtagaaaaaattgagaaagaaaagaagatcaaactc |
4747022 |
T |
|
| Q |
115 |
attaatcttaatgcttaatatttgacgattaactataccaaatctcatataagtcaaaagaaactatagcaaaacttatactaaatcattccactatttt |
214 |
Q |
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|||||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||| |
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| T |
4747021 |
attaattgtaatgctcaatatttgacgattaacaataccaaaattcatacgagtcaaaagaaactatagcaaaacttataataaattattccattatttt |
4746922 |
T |
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| Q |
215 |
tgttattccaactatataaatttcaagga--aata---atttgaggataaaattacacagtaggagtattattttcatgaccaagttgcatat |
302 |
Q |
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|||| |||||||||||||||||||||||| ||| | |||| |||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
4746921 |
tgtttttccaactatataaatttcaaggaggcatatatagttgatgataaaattacacattaagagtattattttcatgaccaagttgcatat |
4746829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 90 - 298
Target Start/End: Complemental strand, 18941427 - 18941220
Alignment:
| Q |
90 |
tgagaaagaaaggaagatcaaactcattaatcttaatgcttaatatttgacgattaactataccaaatctcatataagtcaaaagaaactatagcaaaac |
189 |
Q |
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||||||||||||||||||||||||||| |||| ||||||| | ||||||| |||||||||||||||| |||||| ||| ||| ||||||||||||||| |
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| T |
18941427 |
tgagaaagaaaggaagatcaaactcataaatcataatgctcagtatttgatgattaactataccaaaactcatacgagt--aaaaaaactatagcaaaac |
18941330 |
T |
|
| Q |
190 |
ttatactaaatcattccactatttttgttattccaactatataaatttcaaggaaata-atttgaggataaaattacacagtaggagtattattttcatg |
288 |
Q |
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|||| || | |||||| ||||||| ||||||||||||||||||||||||| | ||| |||||| |||||||||||| || | |||||||||||||||| |
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| T |
18941329 |
atataatagactattccattatttttattattccaactatataaatttcaagaagatatatttgatgataaaattacatagcaagagtattattttcatg |
18941230 |
T |
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| Q |
289 |
accaagttgc |
298 |
Q |
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|||||||||| |
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| T |
18941229 |
accaagttgc |
18941220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 179 - 298
Target Start/End: Complemental strand, 18936998 - 18936878
Alignment:
| Q |
179 |
tatagcaaaacttatactaaatcattccactatttttgttattccaactatataaatttcaaggaaata-atttgaggataaaattacacagtaggagta |
277 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| ||||| |
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| T |
18936998 |
tatagcaaaacttataataaatcattccactatttttgttattccaactatataaatttcaaggaaatatttttgatgataaaattacatagtaagagta |
18936899 |
T |
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| Q |
278 |
ttattttcatgaccaagttgc |
298 |
Q |
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||||||||| ||||||||||| |
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| T |
18936898 |
ttattttcaggaccaagttgc |
18936878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 18937030 - 18936995
Alignment:
| Q |
159 |
tcatataagtcaaaagaaactatagcaaaacttata |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
18937030 |
tcatataagtcaaaagaaactatagcaaaacttata |
18936995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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