View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15513_high_18 (Length: 245)
Name: NF15513_high_18
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_high_18 |
 | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36464099 - 36463881
Alignment:
| Q |
1 |
taacttactttccacgatagcacttcatgagtatatattcatagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagag |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36464099 |
taacttacttttcacaatagcacttcatgagtatatattcatagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagag |
36464000 |
T |
|
| Q |
101 |
aacatgaagaaaaaatccaaccattcttctatatcaaaatagatgagaaaggaacaaattgaagtgaaagaggaaactttgcccaaaagaaggggaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36463999 |
aacatgaagaaaaaatccaaccattcttctatatcaa---------------aacaaattgaagtgaaagaggaaactttacccaaaagaaggggaaata |
36463915 |
T |
|
| Q |
201 |
aatttgtcaaaaagaaatatgtcaaagcatcgcc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36463914 |
aatttgtcaaaaagaaatatgtcaaagcatcgcc |
36463881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 4351329 - 4351267
Alignment:
| Q |
41 |
atagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagagaac |
103 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||| ||| |||||| | |||||||||| |
|
|
| T |
4351329 |
atagttggtgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataagagaac |
4351267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 29199293 - 29199237
Alignment:
| Q |
124 |
ttcttctatatcaaaatagatgagaaaggaacaaattgaagtgaaagaggaaacttt |
180 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||| |||| |||||||| |
|
|
| T |
29199293 |
ttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaacttt |
29199237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 19768947 - 19768880
Alignment:
| Q |
124 |
ttcttctatatcaaaatagatgagaaaggaacaaattgaagtgaaagaggaaactttgcccaaaagaa |
191 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||| |||| |||| ||| |||| ||||| |
|
|
| T |
19768947 |
ttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaa |
19768880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 15690 - 15751
Alignment:
| Q |
41 |
atagttggtgtgatctatttcaataaaaataaatctgaacagagaaaataaggataagagaac |
103 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||| ||| |||||| | |||||||||| |
|
|
| T |
15690 |
atagttggtgtgaacaatttcaataaagataaatctgaagaga-aaaatatgaataagagaac |
15751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University