View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_high_19 (Length: 238)
Name: NF15513_high_19
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 18936488 - 18936285
Alignment:
| Q |
1 |
cactaacattgaaattaagaatacaattttggagatcgaacccatcatatttggata--gtagagtaatggaacatatgatttgcttcttgttatataac |
98 |
Q |
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| T |
18936488 |
cactaacattgaaattaagaatacaattttggagaccgcactcatcatatttggatatagtagagtaatggaacatatgatctgcttcttgttatataac |
18936389 |
T |
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| Q |
99 |
gtcgaagctcatgaatgtgatttggttgcatgtttcgaaaattacatatattaattgatatttagatcacaaggtggtataataatgcaaattaatcttt |
198 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||||||||||||| |
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| T |
18936388 |
gttgaagctcatgaatgtgatttggttgcatgtttcgaaaattacatatattaattgctatttagatcacaaaggtgtatgataatgcaaattaatcttt |
18936289 |
T |
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| Q |
199 |
tgac |
202 |
Q |
| |
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|||| |
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| T |
18936288 |
tgac |
18936285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 18940830 - 18940677
Alignment:
| Q |
4 |
taacattgaaattaagaatacaattttggagatcgaacccatcatatttggatagtagagtaatggaacatatgatttgcttcttgttatataacgtcga |
103 |
Q |
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| T |
18940830 |
taacattgaaactaagaatacaatttttgagactgaacccatcatacttgcatagtagagtaatggaccatatgatctgcttcttgttatatatcgtgga |
18940731 |
T |
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| Q |
104 |
agctcatgaatgtgatttggttgcatgtttcgaaaattacatatattaattgat |
157 |
Q |
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| T |
18940730 |
agctcatgaaggtgacttttttgtatgtttcgaaaattacatatattaattgat |
18940677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 18940664 - 18940603
Alignment:
| Q |
142 |
acatatattaattgatatttagatcacaa-ggtggtataataatgcaaattaatcttttgac |
202 |
Q |
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| T |
18940664 |
acatatattaattgatctttagaccaaaaaggtggtataataatgcaaattaatcttttgac |
18940603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 4662630 - 4662428
Alignment:
| Q |
6 |
acattgaaattaagaatacaattttggagatcgaacccatcatatttggatagtagagt----aatggaacatatgatttgcttcttgttatataacgtc |
101 |
Q |
| |
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| T |
4662630 |
acattaaaattaacaatgcaattttggagaccgaaaccatcatacttgcaaagtagagtgggtaatgaaatatatgatctgcttcttgttatatatcgtc |
4662531 |
T |
|
| Q |
102 |
gaagctcatgaatgtgatttggttgcatgtttcgaaaattacatatattaattgatatttagatcac-aaggtggtataat-aatgcaaattaatctttt |
199 |
Q |
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| T |
4662530 |
gaagctcatgaaggtgacttttttgtatgtttcgaaaatgacatatattaattgatttttaaaccacaaaggtggtataataaattcaaattattctttt |
4662431 |
T |
|
| Q |
200 |
gac |
202 |
Q |
| |
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||| |
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| T |
4662430 |
gac |
4662428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 4746437 - 4746255
Alignment:
| Q |
4 |
taacattgaaattaagaatacaattttggagatcgaacccatcatatttggatagta----gagtaatggaacatatgatttgcttcttgttatataacg |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||| ||| | | || |||||||||| ||||||| |||||||||||||||| | |
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| T |
4746437 |
taacattgaaattaagaatacaattttggagaccgaaaccatcatacttgcacaatagagtgagtaatgga--atatgatatgcttcttgttatatatgg |
4746340 |
T |
|
| Q |
100 |
tcgaagctcatgaatgtgatttggttgcatgtttcgaaaattacatatattaattgatatttagatcac-aaggtggtataataa |
183 |
Q |
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| T |
4746339 |
tcgaagctcataaaggtgacctttttgtctgtttcaaaaatttgatatattaattgatctttagaccacaaaggtgttataataa |
4746255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 3745184 - 3745087
Alignment:
| Q |
8 |
attgaaattaagaatacaattttggagatcgaacccatcatatttggatagtagagt----aatggaacatatgatttgcttcttgttatataacgtc |
101 |
Q |
| |
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|||||||||| ||||||||||||||||| ||| |||||||| ||| | | |||||| ||||||||||||||| |||| ||||||||||| |||| |
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| T |
3745184 |
attgaaattatgaatacaattttggagacagaaaccatcatacttgcacattagagtgaataatggaacatatgatctgctccttgttatatatcgtc |
3745087 |
T |
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