View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15513_high_20 (Length: 235)

Name: NF15513_high_20
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15513_high_20
NF15513_high_20
[»] chr3 (13 HSPs)
chr3 (4-218)||(5483292-5483506)
chr3 (48-218)||(5524498-5524667)
chr3 (82-218)||(5855332-5855468)
chr3 (83-218)||(20342361-20342496)
chr3 (82-218)||(5829436-5829572)
chr3 (81-218)||(5803753-5803890)
chr3 (82-217)||(5453624-5453759)
chr3 (59-218)||(5501644-5501803)
chr3 (61-218)||(5488799-5488956)
chr3 (82-217)||(5445041-5445176)
chr3 (82-218)||(5850181-5850317)
chr3 (4-41)||(5488684-5488721)
chr3 (4-41)||(5501487-5501524)
[»] chr6 (1 HSPs)
chr6 (82-217)||(25810636-25810771)
[»] chr2 (1 HSPs)
chr2 (149-211)||(2672487-2672549)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 5483292 - 5483506
Alignment:
Q  4 ctccaatatgaaaaattattatcaaagactaaaaccaatgaaaattaagccttatattgaaataaatgtaggttagatattactatgttcccatcactct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  5483292 ctccaatatgaaaaattattatcaaagactaaaaccaatgaaaattaagccttatatcgaattaaatataggttagatattactatgttcccatcactct 5483391  T
Q  104 atttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaatatcaagaagaatattgcttgtc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5483392 atttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaacatcaagaagaatattgcttgtc 5483491  T
Q  204 ttgagatctctatgt 218  Q
    |||||||||||||||    
T  5483492 ttgagatctctatgt 5483506  T

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Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 5524498 - 5524667
Alignment:
Q  48 ttaagccttatattgaaataaatgtaggttagatattactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggcta 147  Q
    |||||||||| ||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5524498 ttaagccttaaatt-aaatatatgtaagttagatattactatgatcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggcta 5524596  T
Q  148 aaccaaaatctgatatctttgggatcatatcaatatcaagaagaatattgcttgtcttgagatctctatgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5524597 aaccaaaatctgatatctttgggatcatatcaatatcaagaagaatattgcttgtcttgagatctctatgt 5524667  T

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Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 5855468 - 5855332
Alignment:
Q  82 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaat 181  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5855468 attactatgttcccatcactctatttgtattcgcctcagcttggtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaat 5855369  T
Q  182 atcaagaagaatattgcttgtcttgagatctctatgt 218  Q
    |||||||||||||||||||||||||||||||||||||    
T  5855368 atcaagaagaatattgcttgtcttgagatctctatgt 5855332  T

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Target: chr3; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 20342361 - 20342496
Alignment:
Q  83 ttactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaata 182  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20342361 ttactaggttcccatcactctatttgtattagcctcggcttggtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaata 20342460  T
Q  183 tcaagaagaatattgcttgtcttgagatctctatgt 218  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20342461 tcaagaagaatgttgcttgtcttgagatctctatgt 20342496  T

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Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 5829572 - 5829436
Alignment:
Q  82 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaat 181  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  5829572 attactatgttcccatcactctatttgtattagcctcggcttggtctcccataaatgatctggctaagccaaaatccgatatctttgggatcatatcaat 5829473  T
Q  182 atcaagaagaatattgcttgtcttgagatctctatgt 218  Q
    ||||||||| |||||||||||||||||||||||||||    
T  5829472 atcaagaagtatattgcttgtcttgagatctctatgt 5829436  T

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Target: chr3; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 5803890 - 5803753
Alignment:
Q  81 tattactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaa 180  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  5803890 tattactatgttcccatcactctatttgtattagcctccgcttggtctcccataaatgatctggctaatccaaaatcggatatctttgggatcatatcaa 5803791  T
Q  181 tatcaagaagaatattgcttgtcttgagatctctatgt 218  Q
    |||||||||| |||||||||||||||||||||||||||    
T  5803790 tatcaagaagtatattgcttgtcttgagatctctatgt 5803753  T

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Target: chr3; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 5453624 - 5453759
Alignment:
Q  82 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaat 181  Q
    ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  5453624 attactaagttcccatcactctatttgtattagcctcagcttggtctcccataaatgatctggctaaaccaaaatcggatatctttgggatcatatgaat 5453723  T
Q  182 atcaagaagaatattgcttgtcttgagatctctatg 217  Q
    ||||||||||||||||||||||||||||||||||||    
T  5453724 atcaagaagaatattgcttgtcttgagatctctatg 5453759  T

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Target: chr3; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 5501644 - 5501803
Alignment:
Q  59 attgaaataaatgtaggttagatattactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatct 158  Q
    |||||||||||| || |||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5501644 attgaaataaatataagttagatattactatgatccgatcaatctatttgtattagcctctgcttcgtctcccataaatgatctggctaaaccaaaatct 5501743  T
Q  159 gatatctttgggatcatatcaatatcaagaagaatattgcttgtcttgagatctctatgt 218  Q
    | ||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||    
T  5501744 gctatctttggaatcatatcaatatcaagaagaatattgcttgttttcatatctctatgt 5501803  T

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Target: chr3; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 5488799 - 5488956
Alignment:
Q  61 tgaaataaatgtaggttagatattactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctga 160  Q
    |||||| |||||| |||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||     
T  5488799 tgaaatcaatgtaagttagatattactatgatccgatcaatctatttgtattagcctctgcttcgtctcccataaatgatctggctaaaccaaagtctgc 5488898  T
Q  161 tatctttgggatcatatcaatatcaagaagaatattgcttgtcttgagatctctatgt 218  Q
    |||||||||||||||||||| ||||||||||||||||||||| || | ||||||||||    
T  5488899 tatctttgggatcatatcaacatcaagaagaatattgcttgttttcatatctctatgt 5488956  T

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Target: chr3; HSP #10
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 5445041 - 5445176
Alignment:
Q  82 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaat 181  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||| || ||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  5445041 attactatgttcccatcactctatttgtattagcctcagcttgctctccaatgaatgatctgactaaaccgaaatcggatatctttgggatcatatcaat 5445140  T
Q  182 atcaagaagaatattgcttgtcttgagatctctatg 217  Q
    ||||||||||||||||||||||||||||||||||||    
T  5445141 atcaagaagaatattgcttgtcttgagatctctatg 5445176  T

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Target: chr3; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 5850317 - 5850181
Alignment:
Q  82 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaat 181  Q
    |||||||||||||||| ||||||||||| |||||||| |||| ||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  5850317 attactatgttcccatgactctatttgtcttagcctcagcttggtctcccgtaaatgatctggctaatccaaaatcggatatcttagggatcatatcaat 5850218  T
Q  182 atcaagaagaatattgcttgtcttgagatctctatgt 218  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  5850217 atcaagaagtatattgctggtcttgagatctctatgt 5850181  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 5488684 - 5488721
Alignment:
Q  4 ctccaatatgaaaaattattatcaaagactaaaaccaa 41  Q
    |||||||||||| |||||||||||||||||||||||||    
T  5488684 ctccaatatgaacaattattatcaaagactaaaaccaa 5488721  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 5501487 - 5501524
Alignment:
Q  4 ctccaatatgaaaaattattatcaaagactaaaaccaa 41  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  5501487 ctccaatatgaacaattattatcaaagtctaaaaccaa 5501524  T

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Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 25810771 - 25810636
Alignment:
Q  82 attactatgttcccatcactctatttgtattagcctcggcttcgtctcccataaatgatctggctaaaccaaaatctgatatctttgggatcatatcaat 181  Q
    ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  25810771 attactaagttcccatcactctatttgtattagcctcagcttggtctcccataaatgatctggctaaaccaaaatcggatatctttgggatcatatgaat 25810672  T
Q  182 atcaagaagaatattgcttgtcttgagatctctatg 217  Q
    ||||||||||||||||||||||||||||||||||||    
T  25810671 atcaagaagaatattgcttgtcttgagatctctatg 25810636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 2672549 - 2672487
Alignment:
Q  149 accaaaatctgatatctttgggatcatatcaatatcaagaagaatattgcttgtcttgagatc 211  Q
    |||||||||||||||||||||  |||| ||  ||||||| |||| |||||||| |||||||||    
T  2672549 accaaaatctgatatctttggattcatttctttatcaagtagaacattgcttgccttgagatc 2672487  T

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