View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_high_4 (Length: 545)
Name: NF15513_high_4
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 10 - 545
Target Start/End: Original strand, 48650534 - 48651063
Alignment:
| Q |
10 |
ataacaagaaataatatttttattttaatttgaaaaaattgttggacaaatgcagcagaaactgagctatggaatggatgggggctacgtgtacccgccg |
109 |
Q |
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| T |
48650534 |
ataacaagaaataatatttttatttttatttgaaaaaattgttggacgaatgcagcagaaactgagctatggaatgggtgggggctacgtgtacccgccg |
48650633 |
T |
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| Q |
110 |
ccgaggcaggctattgtgggtgcgatgccaatcatgtaccaccaccctgctcctgtctacagatcaaccgaggctatggcaatgggtgtccctccacctc |
209 |
Q |
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| T |
48650634 |
ccgaggcaggctattgtgggtgcgatgccaatcatgtaccaccaccctgctcctgtctacagatcaaccgaggctatggcaatgggtgtccctccacctc |
48650733 |
T |
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| Q |
210 |
aaatcttccaccaaactcatcaatatcattatgccccatccatcactcctactacaggttaatattacccttttataaattaatctcatccgtaaatatt |
309 |
Q |
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| T |
48650734 |
aaatcttccaccaaactcatcaatatcattatgccccatccatcactcctactacaggttaatattacccttttataaattaatctcatccgtaaatatt |
48650833 |
T |
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| Q |
310 |
tatttttacaagaaacatgtccgaacttttgtatgtaaccttgaagatttgtttattgattttatgtatgtattttaaagtgacagtttgtctttgtggg |
409 |
Q |
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| T |
48650834 |
tatttttacaagaaacatgtccgaacttttgtatgtaaccttgaagatttgtttattgattttatgtatgtattttaaagtgacagtttgtctttgtggg |
48650933 |
T |
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| Q |
410 |
tgtggaatattgataggtacagttagcacgggtgaatgcttcaaaagggtagtggtctgattcagagtcaaagtcagaatcaaaggacagggacgtgatc |
509 |
Q |
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| T |
48650934 |
tgtggaatattgataggtacagttggcacgggtgaatgcttcaaaagggtagtggtct------gagtcagagtcagagtcaaaggagagggacgtgatc |
48651027 |
T |
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| Q |
510 |
gtgaatgcacgtagctacattattatttcatctgtt |
545 |
Q |
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| T |
48651028 |
gtgaatgcacgcagctacattattatttcatctgtt |
48651063 |
T |
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