View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_high_8 (Length: 421)
Name: NF15513_high_8
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_high_8 |
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| [»] scaffold1528 (1 HSPs) |
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Alignment Details
Target: scaffold1528 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold1528
Description:
Target: scaffold1528; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 391 - 789
Alignment:
| Q |
20 |
ttagtgcaattcgtaatcaggtaaattatagtgaaaagtccttcgagtgtgaagagactagaactagctccagattgtggtgtgaattaggataaatctc |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
391 |
ttagtgaaattcgtaatcaggtaaattatagtgaaaagtccttcgagtgtgaagagactagaactagctcca-attgtggtgtgaattaggataaatctc |
489 |
T |
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| Q |
120 |
ctttgtcctttttcctaagtaggatggtaaaatcatcgttgtctcttttatgaatgatgttgggatccttgggatagtttcacaaggtgattggttccac |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
490 |
ctttgtccttttccctaagtaggatggtaaaatcatcgttgtctcttttatgaatgatgttgggatccttgggatagtttcacaacttgattggttccac |
589 |
T |
|
| Q |
220 |
agattgattctattgctggtttgaagtggaaactctctggttcatttgttgttccctgtgttgtgttgctactctttgccaacgctgcacgcttgttttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |
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| T |
590 |
agattgattctattgctggtttgaagtggaaactctctggttcatttgttgttccatgacttgtgttgctactctttgccaacgctgcacgcctgttttt |
689 |
T |
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| Q |
320 |
aggttgtaatctgcggctttgttgtatggaaagtgattcggtggccgtttctgtctgggattttattgtcagagctgcaattttgtgcatattttctgtg |
419 |
Q |
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| T |
690 |
aggttgtaatctgcggctttgttgtatggaaagtgattcggtggccgtttctgtctaggattttattgtcggagctgcaattttgtgcatattttctgtg |
789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 17753667 - 17754065
Alignment:
| Q |
20 |
ttagtgcaattcgtaatcaggtaaattatagtgaaaagtccttcgagtgtgaagagactagaactagctccagattgtggtgtgaattaggataaatctc |
119 |
Q |
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| T |
17753667 |
ttagtgaaattcgtaatcaggtaaattatagtgaaaagtccttcgagtgtgaagagactagaactagctcca-attgtggtgtgaattaggataaatctc |
17753765 |
T |
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| Q |
120 |
ctttgtcctttttcctaagtaggatggtaaaatcatcgttgtctcttttatgaatgatgttgggatccttgggatagtttcacaaggtgattggttccac |
219 |
Q |
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| T |
17753766 |
ctttgtccttttccctaagtaggatggtaaaatcatcgttgtctcttttatgaatgatgttgggatccttgggatagtttcacaacttgattggttccac |
17753865 |
T |
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| Q |
220 |
agattgattctattgctggtttgaagtggaaactctctggttcatttgttgttccctgtgttgtgttgctactctttgccaacgctgcacgcttgttttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |
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| T |
17753866 |
agattgattctattgctggtttgaagtggaaactctctggttcatttgttgttccatgacttgtgttgctactctttgccaacgctgcacgcctgttttt |
17753965 |
T |
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| Q |
320 |
aggttgtaatctgcggctttgttgtatggaaagtgattcggtggccgtttctgtctgggattttattgtcagagctgcaattttgtgcatattttctgtg |
419 |
Q |
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| T |
17753966 |
aggttgtaatctgcggctttgttgtatggaaagtgattcggtggccgtttctgtctaggattttattgtcggagctgcaattttgtgcatattttctgtg |
17754065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 43 - 318
Target Start/End: Original strand, 24454299 - 24454574
Alignment:
| Q |
43 |
aattatagtgaaaagtccttcgagtgtgaagagactagaactagctccagattgtggtgtgaattaggataaatctcctttgtcctttttcctaagtagg |
142 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24454299 |
aattatagtgaaaaatctttcgagtgtgaagagactagaactagctccagattgtggtgtgaattaggataaatctcctttgtcctttttcctaagtagg |
24454398 |
T |
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| Q |
143 |
atggtaaaatcatcgttgtctcttttatgaatgatgttgggatccttgggatagtttcacaaggtgattggttccacagattgattctattgctggtttg |
242 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24454399 |
atggtaaaatcatctttgtctcttttatgaatgatgttgggatccttgggatagtttcacaaggtgattggttccacagattgattctattgctggtttg |
24454498 |
T |
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| Q |
243 |
aagtggaaactctctggttcatttgttgttccctgtgttgtgttgctactctttgccaacgctgcacgcttgtttt |
318 |
Q |
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| T |
24454499 |
aagtggaaactctctggttcatttgttgttccatgtgttgtgttgctactctttgccaacgctgcacgcctgtttt |
24454574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 2468067 - 2467987
Alignment:
| Q |
33 |
taatcaggtaaattatagtgaaaagtccttcgagtgtgaagagactagaactagctccagattgtggtgtgaattaggataa |
114 |
Q |
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|||||||||| ||||||||||||| ||||| |||||||| |||| ||| ||||| ||||||||| ||||| |||||||| |
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| T |
2468067 |
taatcaggtatattatagtgaaaaatcctttaagtgtgaaaggact-gaagtagctatagattgtggagtgaactaggataa |
2467987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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