View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15513_high_9 (Length: 374)

Name: NF15513_high_9
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15513_high_9
NF15513_high_9
[»] chr3 (2 HSPs)
chr3 (15-244)||(50509692-50509920)
chr3 (243-339)||(50507912-50508008)
[»] chr8 (4 HSPs)
chr8 (278-335)||(32910916-32910973)
chr8 (243-335)||(1848531-1848629)
chr8 (275-331)||(44953554-44953610)
chr8 (275-335)||(35979556-35979616)
[»] chr7 (1 HSPs)
chr7 (275-335)||(37544791-37544851)
[»] chr2 (1 HSPs)
chr2 (243-272)||(35006196-35006225)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 50509920 - 50509692
Alignment:
Q  15 gtggatgcaaatccttttgatgatcaacaatgcttcagaattgacttactnnnnnnnnnnngcttcagaattggtatgtgactgcccttcggaatgctca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  50509920 gtggatgcaaatccttttgatgatcaacaatgcttcagaattgacttactaaaaaaaaaa-gcttcagaattggtatgtgactgcccttcggaatgctca 50509822  T
Q  115 tgaccattttctcaaagctctaacaaagtggtatggctacattccttctgctttagaagcagagacattgggattaagagagaggccatgttatggcttg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50509821 tgaccattttctcaaagctctaacaaagtggtatggctacattccttctgctttagaagcagagacattgggattaagagagaggccatgttatggcttg 50509722  T
Q  215 ggaaattagatcgcaagttagtggtggatt 244  Q
    ||||||||||||||||||||||||||||||    
T  50509721 ggaaattagatcgcaagttagtggtggatt 50509692  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 50508008 - 50507912
Alignment:
Q  243 ttaagttaacctcaacaatgtaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaataac 339  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50508008 ttaagttaacctcaacaatttaaattaacgcttgcgtgttgcaccatcaaataactgtcattgcactgtgcataacatatcaatgttgaacaataac 50507912  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 32910916 - 32910973
Alignment:
Q  278 gtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 335  Q
    |||||||||||||||||||| ||||| | | ||| |||||||||||||||||||||||    
T  32910916 gtgttgcaccatcaaataaccgtcatcgtagagttcataacatatcaatgttgaacaa 32910973  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 1848629 - 1848531
Alignment:
Q  243 ttaagttaacctcaacaatgtaaattaa------cgcttgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 335  Q
    |||||||||||||||| |||||||||||      ||| || |||||||||||||||||||| ||| ||| | || || ||||||||||| |||||||||    
T  1848629 ttaagttaacctcaacgatgtaaattaatgttaacgcatgtgtgttgcaccatcaaataaccgtcgttgtaaagggcgtaacatatcaacgttgaacaa 1848531  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 44953554 - 44953610
Alignment:
Q  275 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttga 331  Q
    ||||||||||||||||||||||| ||| ||| | ||| ||||||||||||| |||||    
T  44953554 tgcgtgttgcaccatcaaataaccgtcgttgtaaagttcataacatatcaacgttga 44953610  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 35979616 - 35979556
Alignment:
Q  275 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 335  Q
    ||||||||||||||||||||| |  | |||| | ||| ||||||||||||| |||||||||    
T  35979616 tgcgtgttgcaccatcaaatagccttgattgtagagttcataacatatcaacgttgaacaa 35979556  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 37544791 - 37544851
Alignment:
Q  275 tgcgtgttgcaccatcaaataactgtcattgcacagtgcataacatatcaatgttgaacaa 335  Q
    |||||| |||||||||||||||| ||| ||| | ||| ||||||||||||| |||||||||    
T  37544791 tgcgtgctgcaccatcaaataaccgtcgttgtagagttcataacatatcaacgttgaacaa 37544851  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 35006196 - 35006225
Alignment:
Q  243 ttaagttaacctcaacaatgtaaattaacg 272  Q
    ||||||||||||||||||||||||||||||    
T  35006196 ttaagttaacctcaacaatgtaaattaacg 35006225  T

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