View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_low_1 (Length: 1015)
Name: NF15513_low_1
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 15 - 643
Target Start/End: Complemental strand, 9567210 - 9566581
Alignment:
| Q |
15 |
atgaactgttcggaaagtggaaggcaagattttcaatggcaggttttgtaccgttactgttgagtccatcggtgattgattcagttagaactctcttgaa |
114 |
Q |
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| T |
9567210 |
atgaactgttcggaaagtggaaggcaagattttcaatggcaggttttgtaccgttactgttgagtccatcggtgattgattcagtcagaactctcttgaa |
9567111 |
T |
|
| Q |
115 |
agatttcaataaagattataggattgaacaaacagatgttgctatcaatttagcgtggaagagtaaagttatgtgcacatcttctgcttggagatgttat |
214 |
Q |
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| T |
9567110 |
agatttcaataaagattataggattgaacaaacagatgttgctatcaatttagcgtggaagagtaaagttatgtgcacatcttctgcttggagatgttat |
9567011 |
T |
|
| Q |
215 |
tgac-gggccgactcgagacaagatgaggcttaaagttagacaaggattgaaatcatgagagcacattcgcatgtgcaaattttgttcgataccaaaatg |
313 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9567010 |
tgacagggccgactcgacacaagatgaggcttaaagttagacaaggattgaaatcatgagagcacattcgtatgtgcaaattttgttcgataccaaaatg |
9566911 |
T |
|
| Q |
314 |
taggtaagatcgtagaataaatagactatgtaggagtgttaaatagggtgaaccgagcggctt-aagcaaagacttgtctgatgcttgggccgacttgac |
412 |
Q |
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| T |
9566910 |
taggtaagatcgtagaataaatagactatgtaggagtgttaaataggg-gaaccgagcggcttaaagcaaagacttgtctgatgcttgggccgacttgac |
9566812 |
T |
|
| Q |
413 |
tcactatcataggtctatagacatacttttgttgttcgttcttcnnnnnnnnnnnnatctttagcgaccaagtttctggataggacttgagatttagcta |
512 |
Q |
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| T |
9566811 |
ttgctatcataggtctatagacatacttttgttgttcgttcttctttttcttttttatctttagcgaccaagtttctggataggacttgagatttagcta |
9566712 |
T |
|
| Q |
513 |
tgttcctcttccttttgtaggttattatagagatgaatctctaaacttgttgtacaatggaaaagaaacctcagtccccacttttgcagtcctaagaatt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9566711 |
tgttcctcttccttttgtaggttattatagagatgaatctctaaacttgttgtacaatggaaaagaaacctcagtccccacttttgcagtcctaagaatt |
9566612 |
T |
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| Q |
613 |
taaataatacaaacttttgaaagtgtttgtc |
643 |
Q |
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| T |
9566611 |
taaataatacaaacttttgaaagtgtttgtc |
9566581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 705 - 999
Target Start/End: Complemental strand, 9566519 - 9566225
Alignment:
| Q |
705 |
gagtttggaaaccgtgattttcacattgaatgtgacgactttaaagctaaaattgggaatgttgagcaaccgcgttcgcgtggtggcaagtccgtgccgc |
804 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9566519 |
gagtttggaaaccgtgattttcacatcgaatgtgacgactttgaagctaaaattgggaatgttgagcaaccgcgtccgcgtggtggcaagtccgtgccgc |
9566420 |
T |
|
| Q |
805 |
atttcctagttcatgccacatttccaaacacaacaataacatgaatgaacacattgaacagcctcaaatattaagagactcgtgtagaaaacttctctaa |
904 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9566419 |
atttcctagttcatgccacatttccaaacacaacaataacatgaatgaacacattgaacagcctcaaatattaagagactcatgtagaaaacttctctaa |
9566320 |
T |
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| Q |
905 |
gattttattttcttcaaaagaaaacaataacatgttggttcctatatgcaaatctcatgaattggttaatatatatcatgagttgtgcatgttat |
999 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9566319 |
gattttattttcttcagaagaaaacaataacatgttggttcctatatgcaaatctcatgaattggttaatatatatcatgagttgtgcatgttat |
9566225 |
T |
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