View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15513_low_10 (Length: 470)

Name: NF15513_low_10
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15513_low_10
NF15513_low_10
[»] chr3 (3 HSPs)
chr3 (17-208)||(53534854-53535042)
chr3 (176-208)||(53533654-53533686)
chr3 (176-208)||(53536951-53536983)
[»] chr1 (3 HSPs)
chr1 (25-208)||(4753423-4753603)
chr1 (17-181)||(38202442-38202604)
chr1 (176-208)||(4756677-4756709)
[»] chr8 (2 HSPs)
chr8 (25-208)||(42915883-42916063)
chr8 (176-208)||(42919146-42919178)
[»] chr7 (3 HSPs)
chr7 (25-205)||(23252770-23252947)
chr7 (17-208)||(21944680-21944868)
chr7 (176-208)||(23255547-23255579)
[»] chr5 (5 HSPs)
chr5 (17-208)||(19598759-19598947)
chr5 (207-360)||(16052321-16052471)
chr5 (86-189)||(13951464-13951564)
chr5 (420-451)||(16052533-16052564)
chr5 (214-253)||(42564264-42564303)
[»] chr4 (3 HSPs)
chr4 (17-204)||(13096248-13096431)
chr4 (17-208)||(17382381-17382568)
chr4 (152-213)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (17-131)||(41543723-41543835)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 53534854 - 53535042
Alignment:
Q  17 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacata 116  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53534854 gaaccatatgaattcattgccttggagttggaggaatgtgggatggtggcaattaagttggagtaattgtgttgccaagggtaaaagaggaaaacacata 53534953  T
Q  117 tttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  53534954 tttaattttaacaaagttcacaaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacttacattgtgggacggagggagta 53535042  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 53533654 - 53533686
Alignment:
Q  176 caaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||||||||||||||||||||||||    
T  53533654 caaagcgacttacattgtgggacggagggagta 53533686  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 53536951 - 53536983
Alignment:
Q  176 caaagcgacttacattgtgggacggagggagta 208  Q
    ||||||||||||| |||||||||||||||||||    
T  53536951 caaagcgacttaccttgtgggacggagggagta 53536983  T

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Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 4753603 - 4753423
Alignment:
Q  25 tgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacatatttaattt 124  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4753603 tgaattcattgccttggagttggaggaatgtgggatggtggcaattaagttggagtaattgtgttgccaagggtaaaagaggaaaacacatatttaattt 4753504  T
Q  125 taacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||||||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  4753503 taacaaagttcacaaaagttaaa---tatttcttaatatacgtaaaagtgtcaaagcgacttacattgtgggacggagggagta 4753423  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 38202442 - 38202604
Alignment:
Q  17 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg-aaaacacat 115  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||    
T  38202442 gaaccgtgtgaattcattgccttggagttggaggaatttgggacggtggcaatcaagttggagtaattgtgttgccaagggtaaaagaggaaaaaaacat 38202541  T
Q  116 atttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagc 181  Q
    || |||||||||||||||||||||||||||||   |||||||||||||| |||||| |||||||||    
T  38202542 atctaattttaacaaagttcacaaaagttaaa---tatttcttaatatgtgtaaaagtgtcaaagc 38202604  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 4756677 - 4756709
Alignment:
Q  176 caaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||||||||||||||||||||||||    
T  4756677 caaagcgacttacattgtgggacggagggagta 4756709  T

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Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 42916063 - 42915883
Alignment:
Q  25 tgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacatatttaattt 124  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42916063 tgaattcattgccttggagttggaggaatgtgggacggtggcaattaagttggagtaattgtgttgccaagggtaaaagaggaaaacacatatttaattt 42915964  T
Q  125 taacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42915963 taacaaagttcataaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacttacattgtgggacggagggagta 42915883  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 42919146 - 42919178
Alignment:
Q  176 caaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||| ||||||||||||||||||||    
T  42919146 caaagcgacttatattgtgggacggagggagta 42919178  T

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Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 23252947 - 23252770
Alignment:
Q  25 tgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacatatttaattt 124  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23252947 tgaattcattgccttggagttggaggaatgtgggacggtggcaattaagttggagtaattgtgttgccaagggtaaaagaggaaaacacatatttaattt 23252848  T
Q  125 taacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggaggga 205  Q
    |||||||||||| ||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23252847 taacaaagttcataaaagttaaa---tatttcttaatatgcgaaaaaatgtcaaagcgacttacattgtgggacggaggga 23252770  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 21944868 - 21944680
Alignment:
Q  17 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacata 116  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||||||||||||| | ||||||||||||| |||||    
T  21944868 gaaccgtgtgaattcattgccttggagttggaggaatttgggacggtgacaatcaagttggagtaattgtgttgccaaggataaaagaggaaaaaacata 21944769  T
Q  117 tttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||| || |||||| || |||| | ||| ||||| ||||||    
T  21944768 tttaattttaacaaagttcacaaaagttaaa---gatttcttaatatgcgtaaaagtgccaaagcaacgtacaatttggaacggaaggagta 21944680  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 23255547 - 23255579
Alignment:
Q  176 caaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||||||||||||||||||||||||    
T  23255547 caaagcgacttacattgtgggacggagggagta 23255579  T

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Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 19598947 - 19598759
Alignment:
Q  17 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacata 116  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||  |||||||| |||||||||||||||||||||||| ||||||||||||||| |||||    
T  19598947 gaaccgtgtgaattcattgccttggagtttgaggaatttgggacggtggcaatcaagttggagtaattgtgttgccaagggtaaaagaggaaaaaacata 19598848  T
Q  117 tttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagta 208  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| || || ||||||| | || | | ||||||||||||||||    
T  19598847 tttaattttaacaaagttcacaaaagttaaa---gatttcttaatatgcgtagaagtgccaaagcggcatataatttgggacggagggagta 19598759  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 16052321 - 16052471
Alignment:
Q  207 tagtataagctaatacaagcaataagtgggtgattactgcataattgaggcaaaaaggaaatactactacaaactttactctaattaattcttatctcan 306  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||| ||     
T  16052321 tagtataagctaatacaagcaataagtggttgattactgcataattgaggcaaaaaggaaa---tactacaaattttactctaattaattcttatcacat 16052417  T
Q  307 nnnnnnatgcgtttttctatacgaccaaggagaaatcacacatagactttcatt 360  Q
          ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  16052418 ttttttatgcgttttcctatacgaccaaggtgaaatcacacatagactttcatt 16052471  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 13951564 - 13951464
Alignment:
Q  86 tgttgccaaaggtaaaagaggaaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgact 185  Q
    ||||| ||| ||||||||||| ||| | ||||||| |||| |||||||| |||||||||| |    |||||||||||| ||||||| ||||||||||||     
T  13951564 tgttgtcaagggtaaaagagggaaaaatatatttacttttgacaaagtttacaaaagttaga---gatttcttaatatacgtaaaagtgtcaaagcgaca 13951468  T
Q  186 taca 189  Q
    ||||    
T  13951467 taca 13951464  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Original strand, 16052533 - 16052564
Alignment:
Q  420 gatagtcctaaccaattgtttaacaaagcatg 451  Q
    ||||||||||||||||||||||||||||||||    
T  16052533 gatagtcctaaccaattgtttaacaaagcatg 16052564  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 42564264 - 42564303
Alignment:
Q  214 agctaatacaagcaataagtgggtgattactgcataattg 253  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  42564264 agctaatacaagcaataaattggtgattactgcataattg 42564303  T

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Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 13096248 - 13096431
Alignment:
Q  17 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacata 116  Q
    ||||| |||||||||| | |||| ||||||||||||| ||| |  |||||||| ||||||| |||||||||||||||| ||||||||||||||| |||||    
T  13096248 gaaccgtgtgaattcaattccttagagttggaggaatttgg-acggtggcaatcaagttggggtaattgtgttgccaagggtaaaagaggaaaaaacata 13096346  T
Q  117 tttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggaggg 204  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||| |||| | ||||||||||||    
T  13096347 tttaattttaacaaagttcacaaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacatacaatttgggacggaggg 13096431  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 17382381 - 17382568
Alignment:
Q  17 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacata 116  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  |||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||    
T  17382381 gaaccgtgtgaattcattgccttggagttggaggaatttgggacggtggcaatcaagttggaataattgtgttgccaagggtaaaagaggaaaa-acata 17382479  T
Q  117 tttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagta 208  Q
    | |||||||||||||||||||||||||||||    ||||||||||||| |||||| || ||||||||| |||| | ||| ||||||||||||    
T  17382480 tctaattttaacaaagttcacaaaagttaaa---gatttcttaatatgtgtaaaagtgccaaagcgacgtacaatttggaacggagggagta 17382568  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 25063663 - 25063602
Alignment:
Q  152 atttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagtagtata 213  Q
    ||||||||||||| || ||| || |||| || |||||| | |||||||||||||||||||||    
T  25063663 atttcttaatatgtgtgaaattgccaaaacgtcttacaatttgggacggagggagtagtata 25063602  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 41543835 - 41543723
Alignment:
Q  17 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacata 116  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||||||||||||| ||||||||||||||| |||||    
T  41543835 gaaccgtgtgaattcattgccttggagttggaggaatttgggacggtg-caatcaagttggagtaattgtgttgccaagggtaaaagaggaaaa-acata 41543738  T
Q  117 tttaattttaacaaa 131  Q
    ||||||||| |||||    
T  41543737 tttaattttcacaaa 41543723  T

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