View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_low_14 (Length: 351)
Name: NF15513_low_14
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 90 - 328
Target Start/End: Original strand, 54243677 - 54243915
Alignment:
| Q |
90 |
ggtcttgttgggggaatgcaacaatgtcaaatatcttgagaaaaaactttgccgcctattgaggacctatcctacttgaggtaattaatttatgtagtta |
189 |
Q |
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| T |
54243677 |
ggtcttgttgggggaatgcaacaatgtcaaatatcttcagcaaaaactttgccacctattgaggacttatcctgcttgaggtaattaatttatgtagtta |
54243776 |
T |
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| Q |
190 |
cgcgcagaggatatccgagtcaaaatcaaacaatatgacgcattttaatctcacgctcttcctctcccattgtcttcctcctccctttttatcttttcca |
289 |
Q |
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| T |
54243777 |
cgtgcagaggatatccgagtcaaaatcaaacaatatgacgcattttaatctcacgctcttcctctcccattgtcttcctcctccctttttatcttttcca |
54243876 |
T |
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| Q |
290 |
tttcatggttttttgaagcaacattatccccttttccta |
328 |
Q |
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| T |
54243877 |
tttcatggttttttgaagcaacattatccccttttccta |
54243915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 54243559 - 54243632
Alignment:
| Q |
8 |
gtcgaagaatatcaacaaaataataaattagaacaacaagaacatgttgtagttggaatcaatcgaatctagaa |
81 |
Q |
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|||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54243559 |
gtcgaacaacatcaacaaaatcataaattagaacaacaagaacatgttgtagttggaatcaatcgaatctagaa |
54243632 |
T |
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